Evidence map›Paper›PMID 20654783›Full record

ArticleJournal of dermatological science2010

Identification and analysis of an early diagnostic marker for malignant melanoma: ZAR1 intra-genic differential methylation.

Yui Shinojima, Tadashi Terui, Hiroyuki Hara, Makoto Kimura, Jun Igarashi, Xiaofei Wang, Hiroyuki Kawashima, Yujin Kobayashi, Satomi Muroi, Satoshi Hayakawa and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of dermatological science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Dynamic DNA Methylation Changes ofMediators of inflammation · 2018
    Article
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  14. Specificity factors in cytoplasmic polyadenylation.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Yui ShinojimaDivision of Cutaneous Science, Department of Dermatology, Nihon University Graduate School of Medicine, Tokyo 173-8610, Japan.
Tadashi Terui
Hiroyuki Hara
Makoto Kimura
Jun Igarashi
Xiaofei Wang
Hiroyuki Kawashima
Yujin Kobayashi
Satomi Muroi
Satoshi Hayakawa
Mariko Esumi
Kyoko Fujiwara
Srimoyee Ghosh
Tatsuo Yamamoto
William Held
Hiroki Nagase
Nihon University · JPRoswell Park Comprehensive Cancer Center · US

Funding

Analysis and Identification of Skin Cancer in MiceR01ES012249 · NIEHS · ROSWELL PARK CANCER INSTITUTE CORP · PI NAGASE, HIROKI · 2004 to 2008
$2.0M
NIEHS NIH HHS R01 ES012249
6 · The paper itself

Abstract

backgroundEpigenetic changes such as aberrant DNA methylation and histone modification have been shown to play an important role in the tumorigenesis of malignant melanoma.

objectiveTo identify novel tumor-specific differentially methylated regions (DMRs) in human malignant melanoma.

methodsThe aberrant methylation at 14 candidate human genomic regions identified through a mouse model study with quantitative DNA methylation analysis using the Sequenom MassARRAY system was performed.

resultsThe CpG island Exon 1 region of the Zygote arrest 1 (ZAR1) gene, which is responsible for oocyte-to-embryo transition, showed frequent aberrant methylation of 28 out of 30 (93%) melanoma surgical specimens, 16 of 17 (94%) melanoma cell lines, 0% of 4 normal human epidermal melanocyte (NHEM) cell lines, 0% of 10 melanocytic nevi and 100% of 51 various cancer cell lines. According to the real-time RT-PCR, the ZAR1 gene was overexpressed in part of the hypermethylated cell lines, while its low expression with bivalent histone methylation status was seen in unmethylated cell lines.

conclusionOur findings suggest that the ZAR1 intra-genic differentially methylated region would be a useful tumor marker for malignant melanoma and may be other type of cancers. The involvement of ZAR1 in the carcinogenesis of melanoma, still remains unclear, although we have examined tumorigenic capacities by exogenous full-length ZAR1 over-expression and siRNA knock-down experiments.

Indexed as

DNA Methylation9,10-Dimethyl-1,2-benzanthraceneAnimalsBiomarkers, TumorCell LineCell Line, TumorDiagnosis, DifferentialEgg ProteinsHistonesHumansMelanocytesMelanomaMiceMice, Inbred C57BLNevusSkin Neoplasms9,10-Dimethyl-1,2-benzanthraceneBiomarkers, TumorEgg ProteinsHistonesZar1 protein, human

Identifiers

PMID20654783
PMCPMC2911436
OpenAlexW2138710156

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.