Evidence map›Paper›PMID 20654627›Full record

ArticleJournal of molecular biology2010

Conformational switching of the diphtheria toxin T domain.

Mykola V Rodnin, Alexander Kyrychenko, Paul Kienker, Onkar Sharma, Yevgen O Posokhov, R John Collier, Alan Finkelstein, Alexey S Ladokhin

Abstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mykola V RodninDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160-7421, USA.
Alexander Kyrychenko
Paul Kienker
Onkar Sharma
Yevgen O Posokhov
R John Collier
Alan Finkelstein
Alexey S Ladokhin

Funding

MOLECULAR MECHANISMS OF BACTERIAL PATHOGENESISR37AI022021 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI COLLIER, ROBERT JOHN · 1988 to 2007
$6.1M
INTERACTION OF MODEL SYNAPTIC VESICLES WITH LIPID BILAYR01GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1985 to 2013
$6.0M
MOLECULAR MECHANISMS OF BACTERIAL PATHOGENESISR01AI022021 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI COLLIER, ROBERT JOHN · 1985 to 2012
$3.9M
GATING OF PROTEIN CHANNELS IN LIPID BILAYER MEMBRANESR37GM029210 · NIGMS · YESHIVA UNIVERSITY · PI FINKELSTEIN, ALAN · 1995 to 2004
$3.5M
pH-Triggered Membrane Insertion of ProteinsR01GM069783 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COCCO, MELANIE J, KURNIKOVA, MARIA G · 2004 to 2014
$2.5M
NIAID NIH HHS AI-022021NIAID NIH HHS R01 AI022021NIAID NIH HHS R37 AI022021NIGMS NIH HHS GM-069783NIGMS NIH HHS GM-29210NIGMS NIH HHS R01 GM029210NIGMS NIH HHS R01 GM069783NIGMS NIH HHS R37 GM029210
6 · The paper itself

Abstract

The diphtheria toxin T domain translocates the catalytic C domain across the endosomal membrane in response to acidification. To elucidate the role of histidine protonation in modulating pH-dependent membrane action of the T domain, we have used site-directed mutagenesis coupled with spectroscopic and physiological assays. Replacement of H257 with an arginine (but not with a glutamine) resulted in dramatic unfolding of the protein at neutral pH, accompanied by a substantial loss of helical structure and greatly increased exposure of the buried residues W206 and W281. This unfolding and spectral shift could be reversed by the interaction of the H257R mutant with model lipid membranes. Remarkably, this greatly unfolded mutant exhibited wild-type-like activity in channel formation, N-terminus translocation, and cytotoxicity assays. Moreover, membrane permeabilization caused by the H257R mutant occurs already at pH 6, where wild type protein is inactive. We conclude that protonation of H257 acts as a major component of the pH-dependent conformational switch, resulting in destabilization of the folded structure in solution and thereby promoting the initial membrane interactions necessary for translocation.

Indexed as

Amino Acid SubstitutionCell MembraneCrystallography, X-RayDiphtheria ToxinHistidineHydrogen-Ion ConcentrationLipid BilayersMutagenesis, Site-DirectedProtein ConformationProtein Structure, TertiaryProtonsDiphtheria ToxinHistidineLipid BilayersProtons

Identifiers

PMID20654627
PMCPMC3042302

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.