ArticleBMC plant biology2010
Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment.
Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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Who cites it
80 citing papers in PubMed.
- GsIRT3: a zinc-iron transporter gene from Glycine soja, enhancing alkali stress tolerance in Arabidopsis thaliana.Journal of plant research · 2026Article
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- Saline-Alkaline Stress Suppresses Soybean Germination and Early Seedling Growth via Induction of DNA Damage in Roots.Plants (Basel, Switzerland) · 2026Article
- Metabolomics and Transcriptomic Analysis Revealed the Response Mechanism of Maize to Saline-Alkali Stress.Plant biotechnology journal · 2025Article
- PP2C-Mediated ABA Signaling Pathway Underlies Exogenous Abscisic Acid-Induced Enhancement of Saline-Alkaline Tolerance in Potato (Plants (Basel, Switzerland) · 2025Article
- Root-centered sodium sequestration and transcriptomic regulation under salt and alkali stress in wild soybean (Glycine soja).Frontiers in plant science · 2025Article
- Functional Characterization of the SoybeanPlants (Basel, Switzerland) · 2024Article
- Review
- A natural variation inHorticulture research · 2024Article
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- Transcriptome analysis reveals the mechanism of NaHCOOpen life sciences · 2024Article
- Comparison of the Morpho-Physiological and Molecular Responses to Salinity and Alkalinity Stresses in Rice.Plants (Basel, Switzerland) · 2023Article
- Integration of mRNA and miRNA analysis reveals the molecular mechanisms of sugar beet (Beta vulgaris L.) response to salt stress.Scientific reports · 2023Article
- Quantitative Phosphoproteomic Analysis Provides Insights into the Sodium Bicarbonate Responsiveness ofBiomolecules · 2023Article
- GsPKS24, a calcineurin B-like protein-interacting protein kinase gene from Glycine soja, positively regulates tolerance to pH stress and ABA signal transduction.Functional & integrative genomics · 2023Article
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- Co-Expression Network Analysis of Soybean Transcriptome Identify Hub Genes Under Saline-Alkaline and Water Deficit Stress.Iranian journal of biotechnology · 2022Article
- Effects of Exogenous Melatonin on Root Physiology, Transcriptome and Metabolome of Cotton Seedlings under Salt Stress.International journal of molecular sciences · 2022Article
20 more citing papers are in PubMed but not listed here.
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPlant roots are the primary site of perception and injury for saline-alkaline stress. The current knowledge of saline-alkaline stress transcriptome is mostly focused on saline (NaCl) stress and only limited information on alkaline (NaHCO3) stress is available.
resultsUsing Affymetrix Soybean GeneChip, we conducted transcriptional profiling on Glycine soja roots subjected to 50 mmol/L NaHCO3 treatment. In a total of 7088 probe sets, 3307 were up-regulated and 5720 were down-regulated at various time points. The number of significantly stress regulated genes increased dramatically after 3 h stress treatment and peaked at 6 h. GO enrichment test revealed that most of the differentially expressed genes were involved in signal transduction, energy, transcription, secondary metabolism, transporter, disease and defence response. We also detected 11 microRNAs regulated by NaHCO3 stress.
conclusionsThis is the first comprehensive wild soybean root transcriptome analysis under alkaline stress. These analyses have identified an inventory of genes with altered expression regulated by alkaline stress. The data extend the current understanding of wild soybean alkali stress response by providing a set of robustly selected, differentially expressed genes for further investigation.
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