Evidence map›Paper›PMID 20650900›Full record

ArticleThe Journal of biological chemistry2010

Both forward and reverse TCA cycles operate in green sulfur bacteria.

Kuo-Hsiang Tang, Robert E Blankenship

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The Impact of AbovegroundMicroorganisms · 2024
    Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Hydrogen Drives Part of the Reverse Krebs Cycle under Metal or Meteorite Catalysis.Angewandte Chemie (International ed. in English) · 2022
    Article
  16. Extracellular Electrons Powered Microbial COAdvances in biochemical engineering/biotechnology · 2022
    Article
  17. Article
  18. Emerging Role of TCA Cycle-Related Enzymes in Human Diseases.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kuo-Hsiang TangDepartment of Biology and Chemistry, Washington University, St Louis, Missouri 63130, USA.
Robert E Blankenship
Washington University in St. Louis · US

Funding

Regulation of Phospholipase CR01GM057391 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SONDEK, JOHN E · 1998 to 2021
$6.9M
NIGMS NIH HHS R01-GM57391
6 · The paper itself

Abstract

The anoxygenic green sulfur bacteria (GSBs) assimilate CO(2) autotrophically through the reductive (reverse) tricarboxylic acid (RTCA) cycle. Some organic carbon sources, such as acetate and pyruvate, can be assimilated during the phototrophic growth of the GSBs, in the presence of CO(2) or HCO(3)(-). It has not been established why the inorganic carbonis required for incorporating organic carbon for growth and how the organic carbons are assimilated. In this report, we probed carbon flux during autotrophic and mixotrophic growth of the GSB Chlorobaculum tepidum. Our data indicate the following: (a) the RTCA cycle is active during autotrophic and mixotrophic growth; (b) the flux from pyruvate to acetyl-CoA is very low and acetyl-CoA is synthesized through the RTCA cycle and acetate assimilation; (c) pyruvate is largely assimilated through the RTCA cycle; and (d) acetate can be assimilated via both of the RTCA as well as the oxidative (forward) TCA (OTCA) cycle. The OTCA cycle revealed herein may explain better cell growth during mixotrophic growth with acetate, as energy is generated through the OTCA cycle. Furthermore, the genes specific for the OTCA cycle are either absent or down-regulated during phototrophic growth, implying that the OTCA cycle is not complete, and CO(2) is required for the RTCA cycle to produce metabolites in the TCA cycle. Moreover, CO(2) is essential for assimilating acetate and pyruvate through the CO(2)-anaplerotic pathway and pyruvate synthesis from acetyl-CoA.

Indexed as

Citric Acid CycleAcetate KinaseAcetatesAcetyl Coenzyme AATP Citrate (pro-S)-LyaseAutotrophic ProcessesBacterial ProteinsBiomassCarbonCarbon IsotopesChlorobiCoenzyme A LigasesGene Expression Regulation, BacterialLactic AcidMetabolic Networks and PathwaysModels, Biologicalacetate-CoA ligase (ADP-forming)Acetate KinaseAcetatesAcetyl Coenzyme AATP Citrate (pro-S)-LyaseBacterial ProteinsCarbonCarbon IsotopesCoenzyme A LigasesLactic AcidPyruvic Acid

Identifiers

PMID20650900
PMCPMC2975208
OpenAlexW2116032177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.