Evidence map›Paper›PMID 20647059›Full record

ArticleGene expression patterns : GEP

The expression patterns of minor fibrillar collagens during development in zebrafish.

Ming Fang, Jason S Adams, B Lane McMahan, Raquel J Brown, Julia Thom Oxford

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Genes · 2025
    Article
  4. Loss ofBiomolecules · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Journal of developmental biology · 2020
    Article
  10. Transcriptomic Analyses of Inner Ear Sensory Epithelia in Zebrafish.Anatomical record (Hoboken, N.J. : 2007) · 2020
    Article
  11. Article
  12. Article
  13. The mechanical impact ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
  14. Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag.Frontiers in cell and developmental biology · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The development of the myotendinous junction. A review.Muscles, ligaments and tendons journal · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ming FangDepartment of Biological Sciences, Boise State University, Boise, ID, USA.
Jason S Adams
B Lane McMahan
Raquel J Brown
Julia Thom Oxford
Boise State University · USBrigham Young University · USUniversity of Washington · US

Funding

UNDERGRADUATE COLLEGE OUTREACH PROGRAMP20RR016454 · NCRR · UNIVERSITY OF IDAHO · PI SIMPKIN, JANICE L · 2001 to 2011
$35.3M
Type XI collagen isoforms in skeletal biologyR01AR047985 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2001 to 2005
$1.3M
Type XI collagen isoforms in skeletal biologyK02AR048672 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2002 to 2006
$376k
Regulation of cell signaling by Col11a1 during craniofacial development in the zeR15HD059949 · NICHD · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2009 to 2009
$212k
NCRR NIH HHS P20 RR016454NIAMS NIH HHS K02 AR048672NIAMS NIH HHS KO2AR48672NIAMS NIH HHS R01 AR047985NIAMS NIH HHS R01AR47985NICHD NIH HHS R15 HD059949NICHD NIH HHS R15HD059949
6 · The paper itself

Abstract

Minor fibrillar collagens are recognized as the organizers and nucleators during collagen fibrillogenesis but likely serve additional functions. The minor fibrillar collagens include collagens type V and XI. Mutations of collagens type V and XI can cause Ehlers-Danlos, Stickler's, and Marshall's syndromes in human. We have characterized the spatiotemporal expression patterns of Col11a1, Col11a2, Col5a1 as well as Col5a3 in zebrafish embryos by in situ hybridization. Col5a1 is expressed in developing somites, neural crest, the head mesenchyme, developing cranial cartilage, pharyngeal arches and vertebrae. Col5a3 is detected in the notochord, mesenchyme cells in the eyes and lens. Both Col11a1 and Col11a2 have similar expression patterns, including notochord, otic vesicle, and developing cranial cartilages. Zebrafish may therefore serve as a valuable vertebrate model system for the study of diseases associated with collagens type V and XI mutations.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBranchial RegionDisease Models, AnimalEmbryo, NonmammalianExtracellular MatrixEyeFibrillar CollagensIn Situ HybridizationMesodermNeural CrestNotochordPolymerase Chain ReactionSequence AlignmentFibrillar CollagensZebrafish Proteins

Identifiers

PMID20647059
PMCPMC2956583
OpenAlexW2023783382

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.