Evidence map›Paper›PMID 20644935›Full record

ReviewPlant cell reports2010

Aminoglycoside antibiotics: structure, functions and effects on in vitro plant culture and genetic transformation protocols.

I M G Padilla, L Burgos

Abstract readReview
PubMed Publisher
In one paragraph

Review in Plant cell reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. eYGFPuv-Assisted Transgenic Selection inPlants (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Article
  6. Frontiers in plant science · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Genetic Transformation in Peach (Plants (Basel, Switzerland) · 2020
    Review
  12. Article
  13. A robust genetic transformation protocol to obtain transgenic shoots ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. An antibiotic selection marker for schistosome transgenesis.International journal for parasitology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

I M G PadillaGrupo de Biotecnología de Frutales, Departamento de Mejora, CEBAS-CSIC, Campus Universitario de Espinardo, Apartado de correos 164, 30100, Murcia, Spain. isabelm.gonzalez.padilla@juntadeandalucia.es
L Burgos
Centro de Edafología y Biología Aplicada del Segura · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant transformation protocols generally involve the use of selectable marker genes for the screening of transgenic material. The bacterial gene nptII, coding for a neomycin phosphotransferase, and the hpt gene, coding for a hygromycin phosphotransferase, are frequently used. These enzymes detoxify aminoglycoside antibiotics by phosphorylation, thereby permitting cell growth in the presence of antibiotics. Nevertheless, the screening for transgenic regenerated shoots is often partial and difficult due to regeneration of escapes and chimeras. These difficulties can be caused, in part, by an incorrect assumption about the mode of action of antibiotics in bacterial and eukaryotic cells and in in vitro tissue culture. The information contained in this review could be useful to establish better selection strategies by taking into account factors such as explant complexity, transformation and selection protocols that allow better accessibility to cells of Agrobacterium and antibiotics, and faster regeneration methods that avoid collateral effects of antibiotics on recovered, putative transgenic shoots.

Indexed as

Tissue Culture TechniquesTransformation, GeneticAminoglycosidesCulture MediaGene Expression Regulation, PlantKanamycin KinaseMolecular StructurePhosphotransferases (Alcohol Group Acceptor)Plants, Genetically ModifiedRegenerationStructure-Activity RelationshipAminoglycosidesCulture Mediahygromycin-B kinaseKanamycin KinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID20644935
OpenAlexW2149018870

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.