Evidence map›Paper›PMID 20643940›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Envelope glycans of immunodeficiency virions are almost entirely oligomannose antigens.

Katie J Doores, Camille Bonomelli, David J Harvey, Snezana Vasiljevic, Raymond A Dwek, Dennis R Burton, Max Crispin, Christopher N Scanlan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 230 papers.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed, 339 citations in OpenAlex.

  1. Structural Insights Into ManAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  5. Carbohydrate-Binding Mechanism and Therapeutic Potential of Lectin Mimics.Advances in experimental medicine and biology · 2026
    Review
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  7. Review
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  15. Soluble Human Lectins at the Host-Microbe Interface.Annual review of biochemistry · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Katie J DooresDepartment of Immunology and Microbial Science and International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA 92037, USA.
Camille Bonomelli
David J Harvey
Snezana Vasiljevic
Raymond A Dwek
Dennis R Burton
Max Crispin
Christopher N Scanlan
University of Oxford · GBInternational AIDS Vaccine Initiative · USRagon Institute of MGH, MIT and Harvard · US

Funding

HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR37AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BURTON, DENNIS R. · 1995 to 2004
$2.4M
NIAID NIH HHS AI33292NIAID NIH HHS R01 AI033292NIAID NIH HHS R37 AI033292
6 · The paper itself

Abstract

The envelope spike of HIV is one of the most highly N-glycosylated structures found in nature. However, despite extensive research revealing essential functional roles in infection and immune evasion, the chemical structures of the glycans on the native viral envelope glycoprotein gp120--as opposed to recombinantly generated gp120--have not been described. Here, we report on the identity of the N-linked glycans from primary isolates of HIV-1 (clades A, B, and C) and from the simian immunodeficiency virus. MS analysis reveals a remarkably simple and highly conserved virus-specific glycan profile almost entirely devoid of medial Golgi-mediated processing. In stark contrast to recombinant gp120, which shows extensive exposure to cellular glycosylation enzymes (>70% complex type glycans), the native envelope shows barely detectable processing beyond the biosynthetic intermediate Man5GlcNAc2 (<2% complex type glycans). This oligomannose (Man5-9GlcNAc2) profile is conserved across primary isolates and geographically divergent clades but is not reflected in the current generation of gp120 antigens used for vaccine trials. In the context of vaccine design, we also note that Manalpha1-->2Man-terminating glycans (Man6-9GlcNAc2) of the type recognized by the broadly neutralizing anti-HIV antibody 2G12 are 3-fold more abundant on the native envelope than on the recombinant monomer and are also found on isolates not neutralized by 2G12. The Manalpha1-->2Man residues of gp120 therefore provide a vaccine target that is physically larger and antigenically more conserved than the 2G12 epitope itself. This study revises and extends our understanding of the glycan shield of HIV with implications for AIDS vaccine design.

Indexed as

Antigens, ViralCell LineGlycosylationGolgi ApparatusHIV-1HIV Envelope Protein gp120HumansKineticsMembrane GlycoproteinsOligosaccharidesPolysaccharidesSimian Immunodeficiency VirusSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationViral Envelope ProteinsVirionAntigens, Viralgp120 protein, Human immunodeficiency virus 1gp120 protein, Simian immunodeficiency virusHIV Envelope Protein gp120Membrane GlycoproteinsoligomannosideOligosaccharidesPolysaccharidesViral Envelope Proteins

Identifiers

PMID20643940
PMCPMC2922250
OpenAlexW2096409198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.