Evidence map›Paper›PMID 20643904›Full record

ArticleMolecular pharmacology2010

Molecular model of anticonvulsant drug binding to the voltage-gated sodium channel inner pore.

Gregory M Lipkind, Harry A Fozzard

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Molecular pharmacology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 111 citations in OpenAlex.

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  14. Lacosamide Inhibition of NaFrontiers in pharmacology · 2021
    Article
  15. Development of Allosteric Modulators of Voltage-Gated NaCurrent topics in medicinal chemistry · 2021
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gregory M LipkindThe Cardiac Electrophysiology Laboratories, Department of Medicine, The University of Chicago, Chicago, Illinois, USA.
Harry A Fozzard
University of Chicago · US

Funding

STRUCTURE-FUNCTION OF THE CARDIAC SODIUM CHANNELR01HL065661 · NHLBI · UNIVERSITY OF CHICAGO · PI HANCK, DOROTHY A. · 2000 to 2008
$2.8M
NHLBI NIH HHS HL065661NHLBI NIH HHS R01 HL065661
6 · The paper itself

Abstract

The tricyclic anticonvulsant drugs phenytoin, carbamazepine, and lamotrigine block neuronal voltage-gated Na(+) channels, and their binding sites to domain IV-S6 in the channel's inner pore overlap with those of local anesthetic drugs. These anticonvulsants are neutral, in contrast to the mostly positively charged local anesthetics, but their open/inactivated-state blocking affinities are similar. Using a model of the open pore of the Na(+) channel that we developed by homology with the crystal structures of potassium channels, we have docked these three anticonvulsants with residues identified by mutagenesis as important for their binding energy. The three drugs show a common pharmacophore, including an aromatic ring that has an aromatic-aromatic interaction with Tyr-1771 of Na(V)1.2 and a polar amide or imide that interacts with the aromatic ring of Phe-1764 by a low-energy amino-aromatic hydrogen bond. The second aromatic ring is nearly at a right angle to the pharmacophore and fills the pore lumen, probably interacting with the other S6 segments and physically occluding the inner pore to block Na(+) permeation. Hydrophobic interactions with this second aromatic ring may contribute an important component to binding for anticonvulsants, which compensates energetically for the absence of positive charge in their structures. Voltage dependence of block, their important therapeutic property, results from their interaction with Phe-1764, which connects them to the voltage sensors. Their use dependence is modest and this results from being neutral, with a fast drug off-rate after repolarization, allowing a normal action potential rate in the presence of the drugs.

Indexed as

Models, MolecularAnticonvulsantsBinding SitesIon Channel GatingProtein Structure, SecondaryProtein Structure, TertiarySodium ChannelsAnticonvulsantsSodium Channels

Identifiers

PMID20643904
PMCPMC2981395
OpenAlexW2127913502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.