Evidence map›Paper›PMID 20643810›Full record

ArticleJournal of experimental botany2010

A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.

Jiahn-Chou Guan, Ching-Hui Yeh, Ya-Ping Lin, Yi-Ting Ke, Ming-Tse Chen, Jia-Wen You, Yi-Hsin Liu, Chung-An Lu, Shaw-Jye Wu, Chu-Yung Lin

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Plants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jiahn-Chou GuanInstitute of Plant Biology, National Taiwan University, Taipei, Taiwan.
Ching-Hui Yeh
Ya-Ping Lin
Yi-Ting Ke
Ming-Tse Chen
Jia-Wen You
Yi-Hsin Liu
Chung-An Lu
Shaw-Jye Wu
Chu-Yung Lin
National Central University · TWNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In rice, the class I small heat shock protein (sHSP-CI) genes were found to be selectively induced by L-azetidine-2-carboxylic acid (AZC) on chromosome 3 but not chromosome 1. Here it is shown that a novel cis-responsive element contributed to the differential regulation. By serial deletion and computational analysis, a 9 bp putative AZC-responsive element (AZRE), GTCCTGGAC, located between nucleotides -186 and -178 relative to the transcription initiation site of Oshsp17.3 was revealed. Deletion of this putative AZRE from the promoter abolished its ability to be induced by AZC. Moreover, electrophoretic mobility shift assay (EMSA) revealed that the AZRE interacted specifically with nuclear proteins from AZC-treated rice seedlings. Two AZRE-protein complexes were detected by EMSA, one of which could be competed out by a canonical heat shock element (HSE). Deletion of the AZRE also affected the HS response. Furthermore, transient co-expression of the heat shock factor OsHsfA4b with the AZRE in the promoter of Oshsp17.3 was effective. The requirement for the putative AZRE for AZC and HS responses in transgenic Arabidopsis was also shown. Thus, AZRE represents an alternative form of heat HSE, and its interaction with canonical HSEs through heat shock factors may be required to respond to HS and AZC.

Indexed as

Promoter Regions, GeneticArabidopsisAzetidinecarboxylic AcidBase PairingBase SequenceChromosomes, PlantElectrophoretic Mobility Shift AssayGene Expression Regulation, PlantGenes, PlantHeat-Shock Proteins, SmallHeat-Shock ResponseMolecular Sequence DataNuclear ProteinsOryzaPlant ProteinsPlants, Genetically ModifiedAzetidinecarboxylic AcidHeat-Shock Proteins, SmallNuclear ProteinsPlant ProteinsProtein Synthesis Inhibitors

Identifiers

PMID20643810
PMCPMC2955743
OpenAlexW2137867500

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.