Evidence map›Paper›PMID 20643064›Full record

ArticleBiophysical journal2010

A three-state multi-ion kinetic model for conduction properties of ClC-0 chloride channel.

Xiao-Qing Wang, Tao Yu, Jian-Ping Sang, Xian-Wu Zou, Tsung-Yu Chen, Diana Bolser, Xiaoqin Zou

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiao-Qing WangDepartment of Physics, Wuhan University, Wuhan, China.
Tao Yu
Jian-Ping Sang
Xian-Wu Zou
Tsung-Yu Chen
Diana Bolser
Xiaoqin Zou

Funding

Molecular Physiology of CLC Chloride ChannelsR01GM065447 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEN, TSUNG-YU · 2003 to 2018
$3.9M
A new scoring framework for selecting structural modelsR21GM088517 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI ZOU, XIAOQIN · 2009 to 2010
$417k
NIGMS NIH HHS R01 GM065447NIGMS NIH HHS R01GM065447NIGMS NIH HHS R21 GM088517NIGMS NIH HHS R21GM088517
6 · The paper itself

Abstract

A three-state, multiion kinetic model was proposed to enable the conduction properties of the mammalian channel ClC-0 to be well characterized. Using this rate-theory based model, the current-voltage and conductance-concentration relations were obtained. The five parameters needed were determined by fitting the data of conduction experiments of the wild-type ClC-0 and its K519C mutant. The model was then tested against available calculation and simulation data, and the energy differences between distinct chloride-occupancy states computed agreed with an independent calculation on the binding free energies solved by using the Poisson-Boltzmann equation. The average ion number of conduction and the ion passing duration calculated closely resembled the values obtained from Brownian dynamics simulations. According to the model, the decrease of conductance caused by mutating residue K519 to C519 can be attributed to the effect of K519C mutation on translocation rate constants. Our study sets up a theoretical model for ion permeation and conductance in ClC-0. It provides a starting point for experimentalists to test the three-state model, and would help in understanding the conduction mechanism of ClC-0.

Indexed as

Models, BiologicalBinding SitesChloride ChannelsChloridesElectric ConductivityEscherichia coli ProteinsIonsKineticsMutant ProteinsStatic ElectricityThermodynamicsChloride ChannelsChloridesClC protein, E coliEscherichia coli ProteinsIonsMutant Proteins

Identifiers

PMID20643064
PMCPMC2905080

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.