Evidence map›Paper›PMID 20639227›Full record

ArticleInternational journal of systematic and evolutionary microbiology2011

Mycobacterium sherrisii sp. nov., a slow-growing non-chromogenic species.

Jakko van Ingen, Enrico Tortoli, Rangaraj Selvarangan, Marie B Coyle, John A Crump, Anne B Morrissey, P N Richard Dekhuijzen, Martin J Boeree, Dick van Soolingen

Abstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. IDCases · 2019
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  13. Bacteremic disseminated tuberculosis in sub-saharan Africa: a prospective cohort study.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 5 countries.

Jakko van IngenNational Mycobacteria Reference Laboratory, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Enrico TortoliRegional Reference Centre for Mycobacteria, Microbiology and Virology Laboratory, Careggi Hospital, Florence, Italy.
Rangaraj SelvaranganDepartment of Pathology and Laboratory Medicine, Children's Mercy Hospital, Kansas City, Missouri, USA.
Marie B CoyleDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
John A CrumpKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Anne B MorrisseyDivision of Infectious Diseases and International Health, Duke University Medical Center, Durham, North Carolina, USA.
P N Richard DekhuijzenDepartment of Pulmonary Diseases, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Martin J BoereeDepartment of Pulmonary Diseases, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Dick van SoolingenNational Mycobacteria Reference Laboratory, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Radboud University Medical Center · NLAzienda Ospedaliero-Universitaria Careggi · ITChildren's Mercy Hospital · USDuke Medical Center · USNational Institute for Public Health and the Environment · NLTumaini University · TZUniversity of Washington · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2006 to 2011
$290.5M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Susanna Naggie, GEORGIA Doris TOMARAS · 2005 to 2026
$50.5M
The Impact and Society Ecology of Bacterial Zoonoses in Northern Tanzania: UnderR01TW009237 · FIC · DUKE UNIVERSITY · PI CRUMP, JOHN ANDREW · 2011 to 2014
$1.7M
FIC NIH HHS R01 TW009237NIAID NIH HHS P30 AI064518NIAID NIH HHS P30 AI 64518NIAID NIH HHS U01 AI-03-036NIAID NIH HHS U01 AI06984-01NIAID NIH HHS U19 AI067854PHS HHS D43 PA-03-018
6 · The paper itself

Abstract

'Mycobacterium sherrisii' is an undescribed species that appears to be emerging, in particular, among HIV-positive patients originating from Africa. To describe 'M. sherrisii', to ensure that the species name is validly published and to define its phylogenetic position, we collected 11 of these strains reported in five previous studies, and subjected them to biochemical identification, cell-wall mycolic acid analysis and sequencing of multiple housekeeping genes. The bacteria formed smooth and generally non-chromogenic colonies after 2-3 weeks of subculture at 24-37 °C; photochromogenic and scotochromogenic pigmentation were exhibited by three and two strains, respectively. The strains were positive for the heat-stable catalase test, but negative in tests for hydrolysis of Tween 80, nitrate reduction, β-glucosidase and 3-day arylsulfatase. Mycolic acid patterns, obtained by HPLC, resembled a trimodal profile similar to those of type strains of Mycobacterium simiae, Mycobacterium lentiflavum, Mycobacterium triplex and Mycobacterium genavense. The 16S rRNA gene sequences of the 11 strains differed by 4 bp (99.7 % similarity) from that of the type strain of the closest related species, M. simiae ATCC 25275(T). Levels of internal transcribed spacer (ITS) and partial hsp65 and rpoB gene sequence similarity between the two taxa were 95.8 % (271/283 bp), 97.5 % (391/401 bp) and 95.2 % (700/735 bp), respectively. On the basis of these results, we propose the formal recognition of Mycobacterium sherrisii sp. nov. The type strain is 4773(T) ( = ATCC BAA-832(T) = DSM 45441(T)).

Indexed as

AfricaBacterial ProteinsBacterial Typing TechniquesCell WallChaperonin 60Chromatography, High Pressure LiquidCluster AnalysisDNA, BacterialDNA-Directed RNA PolymerasesDNA, RibosomalDNA, Ribosomal SpacerEnzymesEnzyme StabilityHot TemperatureHumansMolecular Sequence DataBacterial ProteinsChaperonin 60DNA, BacterialDNA-Directed RNA PolymerasesDNA, RibosomalDNA, Ribosomal SpacerEnzymesheat-shock protein 65, MycobacteriumMycolic AcidsPigments, BiologicalRNA polymerase beta subunitRNA, Ribosomal, 16S

Identifiers

PMID20639227
PMCPMC3167899
OpenAlexW2103547928

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.