ArticleBMC genomics2010
Integration of physical and genetic maps of common bean through BAC-derived microsatellite markers.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed, 63 citations in OpenAlex.
- Horticultural performance and QTL mapping of snap bean (Frontiers in plant science · 2025Article
- Mapping yield and yield-related traits using diverse common bean germplasm.Frontiers in genetics · 2023Article
- Assessment of the Origin and Diversity of Croatian Common Bean Germplasm Using Phaseolin Type, SSR and SNP Markers and Morphological Traits.Plants (Basel, Switzerland) · 2021Article
- Article
- Development of whole-genome multiplex assays and construction of an integrated genetic map using SSR markers in Senegalese sole.Scientific reports · 2020Article
- Marker association study of yield attributing traits in common bean (Phaseolus vulgaris L.).Molecular biology reports · 2020Article
- Article
- Dissection of Resistance Genes to Pseudomonas syringae pv. phaseolicola in UI3 Common Bean Cultivar.International journal of molecular sciences · 2017Article
- Article
- De novo transcriptomic analysis of cowpea (Vigna unguiculata L. Walp.) for genic SSR marker development.BMC genetics · 2017Article
- Unraveling the efficiency of RAPD and SSR markers in diversity analysis and population structure estimation in common bean.Saudi journal of biological sciences · 2016Article
- Major Contribution of Flowering Time and Vegetative Growth to Plant Production in Common Bean As Deduced from a Comparative Genetic Mapping.Frontiers in plant science · 2016Article
- SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.G3 (Bethesda, Md.) · 2015Article
- Article
- Analysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs.Plant molecular biology · 2014Article
- Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Review
- BAC-end microsatellites from intra and inter-genic regions of the common bean genome and their correlation with cytogenetic features.PloS one · 2014Article
- Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.Frontiers in plant science · 2014Article
- Conserved synteny-based anchoring of the barley genome physical map.Functional & integrative genomics · 2013Article
- Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundCommon bean (Phaseolus vulgaris L.) is the most important legume for direct human consumption and the goal of this study was to integrate a recently constructed physical map for the species with a microsatellite based genetic map using a BAC library from the genotype G19833 and the recombinant inbred line population DOR364 x G19833.
resultsWe searched for simple sequence repeats (SSRs) in the 89,017 BAC-end sequences (BES) from the physical map and genetically mapped any polymorphic BES-SSRs onto the genetic map. Among the BES it was possible to identify 623 contig-linked SSRs, most of which were highly AT-rich. A subgroup of 230 di-nucleotide and tri-nucleotide based SSR primer pairs from these BACs was tested on the mapping parents with 176 single copy loci and 114 found to be polymorphic markers. Of these, 99 were successfully integrated into the genetic map. The 99 linkages between the genetic and physical maps corresponded to an equal number of contigs containing a total of 5,055 BAC clones.
conclusionsClass II microsatellites were more common in the BES than longer class I microsatellites. Both types of markers proved to be valuable for linking BAC clones to the genetic map and were successfully placed across all 11 linkage groups. The integration of common bean physical and genetic maps is an important part of comparative genome analysis and a prelude to positional cloning of agronomically important genes for this crop.
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