Evidence map›Paper›PMID 20635345›Full record

ArticleProteins2010

Crystal structure of a truncated urease accessory protein UreF from Helicobacter pylori.

Robert Lam, Vladimir Romanov, Kathy Johns, Kevin P Battaile, Jean Wu-Brown, Jennifer L Guthrie, Robert P Hausinger, Emil F Pai, Nickolay Y Chirgadze

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Structural characterization of the urease accessory protein UreF from Klebsiella pneumoniae.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Intrinsic disorder and metal binding in UreG proteins from Archae hyperthermophiles: GTPase enzymes involved in the activation of Ni(II) dependent urease.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  7. The conformational response to Zn(II) and Ni(II) binding of Sporosarcina pasteurii UreG, an intrinsically disordered GTPase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  8. Nickel binding properties of Helicobacter pylori UreF, an accessory protein in the nickel-based activation of urease.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  9. Article
  10. Article
  11. Structure of the UreD-UreF-UreG-UreE complex in Helicobacter pylori: a model study.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2013
    Article
  12. Biosynthesis of the urease metallocenter.The Journal of biological chemistry · 2013
    Review
  13. Review
  14. Article
  15. Unraveling the Helicobacter pylori UreG zinc binding site using X-ray absorption spectroscopy (XAS) and structural modeling.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2012
    Article
  16. Article
  17. Article
  18. Article
  19. Sumner's legacy: a century of urease crystals and recent structural advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Robert LamDivision of Cancer Genomics and Proteomics, Ontario Cancer Institute, University Health Network, Toronto, Ontario M5G 2C4, Canada.
Vladimir Romanov
Kathy Johns
Kevin P Battaile
Jean Wu-Brown
Jennifer L Guthrie
Robert P Hausinger
Emil F Pai
Nickolay Y Chirgadze
University Health Network · CAOntario Institute for Cancer Research · CAArgonne National Laboratory · USMichigan State University · US

Funding

MECHANISM OF UREASE METALLOCENTER BIOSYNTHESISR01DK045686 · NIDDK · MICHIGAN STATE UNIVERSITY · PI HAUSINGER, ROBERT P · 1994 to 2010
$2.1M
NIDDK NIH HHS DK45686NIDDK NIH HHS R01 DK045686
6 · The paper itself

Abstract

Urease plays a central role in the pathogenesis of Helicobacter pylori in humans. Maturation of this nickel metalloenzyme in bacteria requires the participation of the accessory proteins UreD (termed UreH in H. pylori), UreF, and UreG, which form sequential complexes with the urease apoprotein as well as UreE, a metallochaperone. Here, we describe the crystal structure of C-terminal truncated UreF from H. pylori (residues 1-233), the first UreF structure to be determined, at 1.55 A resolution using SAD methods. UreF forms a dimer in vitro and adopts an all-helical fold congruent with secondary structure prediction. On the basis of evolutionary conservation analysis, the structure reveals a probable binding surface for interaction with other urease components as well as key conserved residues of potential functional relevance.

Indexed as

Protein Structure, SecondaryAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayHelicobacter pyloriModels, MolecularMolecular Sequence DataMutationProtein FoldingProtein MultimerizationProtein Structure, QuaternarySequence Homology, Amino AcidUreaseBacterial ProteinsUreaseUreF protein, bacteria

Identifiers

PMID20635345
PMCPMC2978904
OpenAlexW2100848692

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.