Evidence map›Paper›PMID 20633017›Full record

ArticleBrain pathology (Zurich, Switzerland)2010

Analysis of TSC cortical tubers by deep sequencing of TSC1, TSC2 and KRAS demonstrates that small second-hit mutations in these genes are rare events.

Wei Qin, Jennifer A Chan, Harry V Vinters, Gary W Mathern, David N Franz, Bruce E Taillon, Pascal Bouffard, David J Kwiatkowski

Open access · greenAbstract read
In one paragraph

Article in Brain pathology (Zurich, Switzerland), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 2 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 2 syntheses or guidelines pooled it, 121 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Role of Extracellular Vesicles in TSC Renal Cystogenesis.International journal of molecular sciences · 2025
    Article
  8. Article
  9. Article
  10. Somatic Mosaicism in Brain Disorders.Annual review of pathology · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Cytogenomic epileptology.Molecular cytogenetics · 2023
    Review
  18. Article
  19. Article
  20. Somatic mosaicism in the diseased brain.Molecular cytogenetics · 2022
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Wei QinTranslational Medicine Division, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Jennifer A Chan
Harry V Vinters
Gary W Mathern
David N Franz
Bruce E Taillon
Pascal Bouffard
David J Kwiatkowski
Brigham and Women's Hospital · USHarvard University · USNeurology, Inc · USUniversity of Calgary · CAUniversity of California, Los Angeles · US

Funding

Vector Query and Therapy For TSC and NF2 LesionsP01NS024279 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI KWIATKOWSKI, DAVID J. · 1987 to 2012
$14.7M
TUBEROUS SCLEROSIS--MUTATIONS AND MURINE MODELSR01NS031535 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KWIATKOWSKI, DAVID J. · 1994 to 2006
$2.3M
NINDS NIH HHS 1P01NS24279NINDS NIH HHS P01 NS024279NINDS NIH HHS R01 NS031535NINDS NIH HHS R01 NS3899
6 · The paper itself

Abstract

Tuberous sclerosis complex (TSC) is an often severe neurocutaneous syndrome. Cortical tubers are the predominant neuropathological finding in TSC, and their number and location has been shown to correlate roughly with the severity of neurologic features in TSC. Past studies have shown that genomic deletion events in TSC1 or TSC2 are very rare in tubers, and suggested the potential involvement of the MAPK pathway in their pathogenesis. We used deep sequencing to assess all coding exons of TSC1 and TSC2, and the activating mutation hot spots within KRAS in 46 tubers from TSC patients. Germline heterozygous mutations were identified in 81% of tubers. The same secondary mutation in TSC2 was identified in six tuber samples from one individual. Further study showed that this second hit mutation was widely distributed in the cortex from one cerebral hemisphere of this individual at frequencies up to 10%. No other secondary mutations were found in the other 40 tubers analyzed. These data indicate that small second hit mutations in any of these three genes are very rare in TSC tubers. However, in one TSC individual, a second hit TSC2 point mutation occurred early during brain development, and likely contributed to tuber formation.

Indexed as

BrainGerm-Line MutationHigh-Throughput Nucleotide SequencingHumansImmunoprecipitationMass SpectrometryMitogen-Activated Protein Kinase KinasesMutationProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsSequence DeletionSignal TransductionTuberous SclerosisTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinKRAS protein, humanMitogen-Activated Protein Kinase KinasesProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsTSC1 protein, humanTSC2 protein, humanTuberous Sclerosis Complex 1 ProteinTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID20633017
PMCPMC2951479
OpenAlexW1486174444

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.