Evidence map›Paper›PMID 20631398›Full record

ArticleBiology of reproduction2010

Microarray-based analysis of cell-cycle gene expression during spermatogenesis in the mouse.

Dipanwita Roy Choudhury, Chris Small, Yufeng Wang, Paul R Mueller, Vivienne I Rebel, Michael D Griswold, John R McCarrey

Open access · bronzeAbstract read
In one paragraph

Article in Biology of reproduction, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  4. Study ofLife (Basel, Switzerland) · 2021
    Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Dipanwita Roy ChoudhuryDepartment of Biology, University of Texas at San Antonio, San Antonio, Texas, USA.
Chris Small
Yufeng Wang
Paul R Mueller
Vivienne I Rebel
Michael D Griswold
John R McCarrey
The University of Texas at San Antonio · USCancer Research Institute of the Slovak Academy of Sciences · SKThe University of Texas Health Science Center at San Antonio · USWashington State University · US

Funding

Regulation of a Spermatogenesis-Specific GeneR01HD046637 · NICHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R · 2005 to 2009
$1.5M
NICHD NIH HHS HD46637NICHD NIH HHS R01 HD046637
6 · The paper itself

Abstract

Mammalian spermatogenesis is a continuum of cellular differentiation in a lineage that features three principal stages: 1) a mitotically active stage in spermatogonia, 2) a meiotic stage in spermatocytes, and 3) a postreplicative stage in spermatids. We used a microarray-based approach to identify changes in expression of cell-cycle genes that distinguish 1) mitotic type A spermatogonia from meiotic pachytene spermatocytes and 2) pachytene spermatocytes from postreplicative round spermatids. We detected expression of 550 genes related to cell-cycle function in one or more of these cell types. Although a majority of these genes were expressed during all three stages of spermatogenesis, we observed dramatic changes in levels of individual transcripts between mitotic spermatogonia and meiotic spermatocytes and between meiotic spermatocytes and postreplicative spermatids. Our results suggest that distinct cell-cycle gene regulatory networks or subnetworks are associated with each phase of the cell cycle in each spermatogenic cell type. In addition, we observed expression of different members of certain cell-cycle gene families in each of the three spermatogenic cell types investigated. Finally, we report expression of 221 cell-cycle genes that have not previously been annotated as part of the cell cycle network expressed during spermatogenesis, including eight novel genes that appear to be testis-specific.

Indexed as

Gene Expression RegulationGenes, cdcAnimalsCell CycleGene Expression ProfilingMaleMeiosisMiceMitosisOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSpermatidsSpermatocytesSpermatogenesisSpermatogoniaRNA, Messenger

Identifiers

PMID20631398
PMCPMC2957154
OpenAlexW2148740340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.