Evidence map›Paper›PMID 20629196›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2010

Correlation analysis of intracellular and secreted cytokines via the generalized integrated mean fluorescence intensity.

Parisa Shooshtari, Edgardo S Fortuno, Darren Blimkie, Miao Yu, Arvind Gupta, Tobias R Kollmann, Ryan R Brinkman

Abstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

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  15. TOLLIP Optimizes Dendritic Cell Maturation to Lipopolysaccharide andJournal of immunology (Baltimore, Md. : 1950) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Parisa ShooshtariTerry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada.
Edgardo S Fortuno
Darren Blimkie
Miao Yu
Arvind Gupta
Tobias R Kollmann
Ryan R Brinkman

Funding

Multi-group semi-blind ICA of fMRIR01EB000840 · NIBIB · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2003 to 2011
$3.2M
The Statistical and Computational Analysis of Flow Cytometry DataR01EB008400 · NIBIB · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GOTTARDO, RAPHAEL · 2008 to 2015
$2.9M
IMMUNE FUNCTION AND BIODEFENSE IN CHILDREN. ELDERLY AND IMMUNOCOMPROMI-266050023N01AI050023 · NIAID · UNIVERSITY OF WASHINGTON · PI WILSON, CHRISTOPHER · 2006 to 2006
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NIAID NIH HHS N01 AI050023NIBIB NIH HHS 1R01EB00840NIBIB NIH HHS R01 EB000840NIBIB NIH HHS R01 EB008400
6 · The paper itself

Abstract

The immune response in humans is usually assessed using immunogenicity assays to provide biomarkers as correlates of protection (CoP). Flow cytometry is the assay of choice to measure intracellular cytokine staining (ICS) of cell-mediated immune (CMI) biomarkers. For CMI analysis, the integrated mean fluorescence intensity (iMFI) was introduced as a metric to represent the total functional CMI response as a CoP. iMFI is computed by multiplying the relative frequency (percent positive) of cells expressing a particular cytokine with the MFI of that population, and correlates better with protection in challenge models than either the percentage or the MFI of the cytokine-positive population. While determination of the iMFI as a CoP can readily be accomplished in animal models that allow challenge/protection experiments, this is not feasible in humans for ethical reasons. As a first step toward extending the iMFI concept to humans, we investigated the correlation of the iMFI derived from a human innate immune response ICS assay with functional cytokine release into the culture supernatant, as innate cytokines need to be released to have a functional impact. Next, we developed a quantitatively more correlative mathematical approach for calculating the functional response of cytokine-producing cells by incorporating the assignment of different weights to the magnitude (frequency of cytokine-positive cells) and the quality (the MFI) of the observed innate immune response. We refer to this model as generalized iMFI.

Indexed as

FluorescenceImmunity, InnateAdultAntigen-Presenting CellsCytokinesFemaleFlow CytometryHumansMaleModels, ImmunologicalStaining and LabelingStatistics as TopicToll-Like ReceptorsCytokinesToll-Like Receptors

Identifiers

PMID20629196
PMCPMC2930075

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.