Evidence map›Paper›PMID 20628579›Full record

ArticlePLoS pathogens2010

Functional genetic diversity among Mycobacterium tuberculosis complex clinical isolates: delineation of conserved core and lineage-specific transcriptomes during intracellular survival.

Susanne Homolka, Stefan Niemann, David G Russell, Kyle H Rohde

Abstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
158citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

158 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
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  17. Review
  18. Heliyon · 2023
    Article
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  20. Article

98 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Susanne HomolkaMolecular Mycobacteriology, Research Center Borstel, Borstel, Germany.
Stefan Niemann
David G Russell
Kyle H Rohde

Funding

Environmental Cues and Responses in TuberculosisR01AI067027 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2006 to 2015
$4.0M
Cell Biology of Mycobacterium Tuberculosis InfectionR01AI057086 · NIAID · CORNELL UNIVERSITY ITHACA · PI RUSSELL, DAVID G · 2003 to 2010
$2.9M
NIAID NIH HHS AI057086NIAID NIH HHS AI067027NIAID NIH HHS R01 AI057086NIAID NIH HHS R01 AI067027
6 · The paper itself

Abstract

Tuberculosis exerts a tremendous burden on global health, with approximately 9 million new infections and approximately 2 million deaths annually. The Mycobacterium tuberculosis complex (MTC) was initially regarded as a highly homogeneous population; however, recent data suggest the causative agents of tuberculosis are more genetically and functionally diverse than appreciated previously. The impact of this natural variation on the virulence and clinical manifestations of the pathogen remains largely unknown. This report examines the effect of genetic diversity among MTC clinical isolates on global gene expression and survival within macrophages. We discovered lineage-specific transcription patterns in vitro and distinct intracellular growth profiles associated with specific responses to host-derived environmental cues. Strain comparisons also facilitated delineation of a core intracellular transcriptome, including genes with highly conserved regulation across the global panel of clinical isolates. This study affords new insights into the genetic information that M. tuberculosis has conserved under selective pressure during its long-term interactions with its human host.

Indexed as

Gene Expression ProfilingGenetic VariationHumansMacrophagesMycobacterium tuberculosisRNA, BacterialSpecies SpecificityTuberculosisRNA, Bacterial

Identifiers

PMID20628579
PMCPMC2900310

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.