Evidence map›Paper›PMID 20628056›Full record

ArticleThe Journal of biological chemistry2010

Ribosome modulation factor, an important protein for cell viability encoded by the polyamine modulon.

Yusuke Terui, Yuzuru Tabei, Mariko Akiyama, Kyohei Higashi, Hideyuki Tomitori, Kaneyoshi Yamamoto, Akira Ishihama, Kazuei Igarashi, Keiko Kashiwagi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Vesicles FromFrontiers in microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yusuke TeruiFaculty of Pharmacy, Chiba Institute of Science, 15-8 Shiomi-cho, Choshi, Chiba 288-0025, Japan.
Yuzuru Tabei
Mariko Akiyama
Kyohei Higashi
Hideyuki Tomitori
Kaneyoshi Yamamoto
Akira Ishihama
Kazuei Igarashi
Keiko Kashiwagi
Chiba Institute of Science · JPAmine Pharma (Japan) · JPHosei University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We searched for proteins whose synthesis is enhanced by polyamines at the stationary phase of cell growth using an Escherichia coli polyamine-requiring mutant in which cell viability is greatly decreased by polyamine deficiency. The synthesis of ribosome modulation factor (RMF) was strongly enhanced by polyamines at the level of translation at the stationary phase of cell growth. In rmf mRNA, a Shine-Dalgarno (SD) sequence is located 11 nucleotides upstream of the initiation codon AUG. When the SD sequence was moved to the more common position 8 nucleotides upstream of the initiation codon, the degree of polyamine stimulation was reduced, although the level of RMF synthesis was markedly increased. Polyamine stimulation of RMF synthesis was found to be caused by a selective structural change of the bulged-out region of the initiation site of rmf mRNA. The decrease in cell viability caused by polyamine deficiency was prevented by the addition of a modified rmf gene whose synthesis is not influenced by polyamines. The results indicate that polyamines enhance cell viability of E. coli at least in part by enhancing RMF synthesis.

Indexed as

Biogenic PolyaminesCodon, InitiatorEscherichia coliEscherichia coli ProteinsRegulatory Sequences, Ribonucleic AcidRibosomal ProteinsRNA, BacterialBiogenic PolyaminesCodon, InitiatorEscherichia coli ProteinsRegulatory Sequences, Ribonucleic AcidRibosomal Proteinsribosome modulation factor, E coliRNA, Bacterial

Identifiers

PMID20628056
PMCPMC2937897
OpenAlexW2059693313

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.