Evidence map›Paper›PMID 20628016›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Sum frequency generation and solid-state NMR study of the structure, orientation, and dynamics of polystyrene-adsorbed peptides.

Tobias Weidner, Nicholas F Breen, Kun Li, Gary P Drobny, David G Castner

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Article
  2. Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.Annual review of analytical chemistry (Palo Alto, Calif.) · 2021
    Article
  3. Role of Water in CaCOJournal of the American Chemical Society · 2021
    Article
  4. Location and Conformation of the LKα14 Peptide in Water/Ethanol Mixtures.Langmuir : the ACS journal of surfaces and colloids · 2021
    Article
  5. Mirror-image antiparallel β-sheets organize water molecules into superstructures of opposite chirality.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Surface Analysis: From Single Crystals to Biomaterials.Surface and interface analysis : SIA · 2018
    Article
  10. Review
  11. Basic experiments inMethods (San Diego, Calif.) · 2018
    Review
  12. Article
  13. Article
  14. Static solid-stateProgress in nuclear magnetic resonance spectroscopy · 2017
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Flexibility and Solvation of Amyloid-β Hydrophobic Core.The Journal of biological chemistry · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tobias WeidnerDepartment of Bioengineering and National ESCA and Surface Analysis Center for Biomedical Problems, University of Washington, Seattle, WA 98195, USA.
Nicholas F Breen
Kun Li
Gary P Drobny
David G Castner

Funding

Surface Analysis Facility for Biomedical ProblemsP41EB002027 · NIBIB · UNIVERSITY OF WASHINGTON · PI CASTNER, DAVID G · 2003 to 2019
$17.6M
Protein-Crystal Molecular Recognition in BiomineralizationR01DE012554 · NIDCR · UNIVERSITY OF WASHINGTON · PI STAYTON, PATRICK S. · 1997 to 2012
$6.2M
Nanoscale Investigation of Protein-Surface InteractionsR01GM074511 · NIGMS · UNIVERSITY OF WASHINGTON · PI CASTNER, DAVID G · 2006 to 2009
$2.3M
NIBIB NIH HHS P41 EB002027NIDCR NIH HHS R01 DE012554NIDCR NIH HHS R01 DE12554NIGMS NIH HHS R01 GM074511
6 · The paper itself

Abstract

The power of combining sum frequency generation (SFG) vibrational spectroscopy and solid-state nuclear magnetic resonance (ssNMR) spectroscopy to quantify, with site specificity and atomic resolution, the orientation and dynamics of side chains in synthetic model peptides adsorbed onto polystyrene (PS) surfaces is demonstrated in this study. Although isotopic labeling has long been used in ssNMR studies to site-specifically probe the structure and dynamics of biomolecules, the potential of SFG to probe side chain orientation in isotopically labeled surface-adsorbed peptides and proteins remains largely unexplored. The 14 amino acid leucine-lysine peptide studied in this work is known to form an alpha-helical secondary structure at liquid-solid interfaces. Selective, individual deuteration of the isopropyl group in each leucine residue was used to probe the orientation and dynamics of each individual leucine side chain of LKalpha14 adsorbed onto PS. The selective isotopic labeling methods allowed SFG analysis to determine the orientations of individual side chains in adsorbed peptides. Side chain dynamics were obtained by fitting the deuterium ssNMR line shape to specific motional models. Through the combined use of SFG and ssNMR, the dynamic trends observed for individual side chains by ssNMR have been correlated with side chain orientation relative to the PS surface as determined by SFG. This combination provides a more complete and quantitative picture of the structure, orientation, and dynamics of these surface-adsorbed peptides than could be obtained if either technique were used separately.

Indexed as

AdsorptionAlgorithmsAmino Acid SequenceLeucineLysineModels, ChemicalModels, MolecularMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularPeptidesPolystyrenesProtein Structure, SecondarySpectrum AnalysisLeucineLysinePeptidesPolystyrenes

Identifiers

PMID20628016
PMCPMC2922137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.