ArticleDatabase : the journal of biological databases and curation2010
Choosing a genome browser for a Model Organism Database: surveying the maize community.
Article in Database : the journal of biological databases and curation, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Genome-Wide Investigation of the CRF Gene Family in Maize and Functional Analysis of ZmCRF9 in Response to Multiple Abiotic Stresses.International journal of molecular sciences · 2024Article
- GrainGenes: a data-rich repository for small grains genetics and genomics.Database : the journal of biological databases and curation · 2022Article
- Precision Mapping of a Maize MAGIC Population Identified a Candidate Gene for the Senescence-Associated Physiological Traits.Frontiers in genetics · 2021Article
- Variation in Maize Chlorophyll Biosynthesis Alters Plant Architecture.Plant physiology · 2020Article
- Interaction Between Induced and Natural Variation atG3 (Bethesda, Md.) · 2020Article
- Dissecting the genetics of cold tolerance in a multiparental maize population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Mapping of resistance to corn borers in a MAGIC population of maize.BMC plant biology · 2019Article
- AG3 (Bethesda, Md.) · 2019Article
- MaizeGDB 2018: the maize multi-genome genetics and genomics database.Nucleic acids research · 2019Article
- Spatial Mapping and Profiling of Metabolite Distributions during Germination.Plant physiology · 2017Article
- QTL Mapping for Yield and Resistance against Mediterranean Corn Borer in Maize.Frontiers in plant science · 2017Article
- Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.Database : the journal of biological databases and curation · 2017Article
- Association mapping for cold tolerance in two large maize inbred panels.BMC plant biology · 2016Article
- MaizeGDB update: new tools, data and interface for the maize model organism database.Nucleic acids research · 2016Article
- Article
- Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes.Molecular genetics and genomics : MGG · 2015Article
- Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize.G3 (Bethesda, Md.) · 2015Article
- Article
- Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: An example using soybean.Genetics and molecular biology · 2012Article
- ABrowse--a customizable next-generation genome browser framework.BMC bioinformatics · 2012Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As the B73 maize genome sequencing project neared completion, MaizeGDB began to integrate a graphical genome browser with its existing web interface and database. To ensure that maize researchers would optimally benefit from the potential addition of a genome browser to the existing MaizeGDB resource, personnel at MaizeGDB surveyed researchers' needs. Collected data indicate that existing genome browsers for maize were inadequate and suggest implementation of a browser with quick interface and intuitive tools would meet most researchers' needs. Here, we document the survey's outcomes, review functionalities of available genome browser software platforms and offer our rationale for choosing the GBrowse software suite for MaizeGDB. Because the genome as represented within the MaizeGDB Genome Browser is tied to detailed phenotypic data, molecular marker information, available stocks, etc., the MaizeGDB Genome Browser represents a novel mechanism by which the researchers can leverage maize sequence information toward crop improvement directly. Database URL: http://gbrowse.maizegdb.org/
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