Evidence map›Paper›PMID 20627767›Full record

ArticleCancer epidemiology2010

DNA methylation in pre-diagnostic serum samples of breast cancer cases: results of a nested case-control study.

Jennifer D Brooks, Paul Cairns, Roy E Shore, Catherine B Klein, Isaac Wirgin, Yelena Afanasyeva, Anne Zeleniuch-Jacquotte

Open access · greenAbstract read
In one paragraph

Article in Cancer epidemiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 7 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 7 syntheses or guidelines pooled it, 47 citations in OpenAlex.

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  13. DNA Methylation Markers for Breast Cancer Detection in the Developing World.Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jennifer D BrooksDivision of Epidemiology, Department of Environmental Medicine, New York University School of Medicine, New York, NY 10016, United States. brooksj@mskcc.org
Paul Cairns
Roy E Shore
Catherine B Klein
Isaac Wirgin
Yelena Afanasyeva
Anne Zeleniuch-Jacquotte
New York University · USFox Chase Cancer Center · USRadiation Effects Research Foundation · JP

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
RESEARCH IN ENVIRONMENTAL HEALTH SCIENCES (CENTER GRANT)P30ES000260 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 1985 to 2020
$26.1M
Vitamin D, Related Genes and Breast Cancer RiskR01CA098661 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZELENIUCH-JAQUOTTE, ANNE · 2003 to 2013
$9.7M
Methylation &Proteomics-Based Detection of Renal CancerU01CA111242 · NCI · FOX CHASE CANCER CENTER · PI CAIRNS, PAUL · 2004 to 2009
$2.0M
WOMEN'S HEALTH STUDYR01CA034588 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TONIOLO, PAOLO G. · 1985 to 2002
$607k
NCI NIH HHS 1 U01 CA111242NCI NIH HHS CA-016087NCI NIH HHS P30 CA016087NCI NIH HHS R01CA034588NCI NIH HHS R01 CA098661NCI NIH HHS U01 CA111242NIEHS NIH HHS ES-000260NIEHS NIH HHS P30 ES000260
6 · The paper itself

Abstract

backgroundPromoter methylation of tumor suppressor genes is a frequent and early event in breast carcinogenesis. Paired tumor tissue and serum samples from women with breast cancer show that promoter methylation is detectable in both sample types, with good concordance. This suggests the potential for these serum markers to be used for breast cancer detection.

methodsThe current study was a case-control study nested within the prospective New York University Women's Health Study cohort aimed to assess the ability of promoter methylation in serum to detect pre-clinical disease. Cases were women with blood samples collected within the 6 months preceding breast cancer diagnosis (n=50). Each case was matched to 2 healthy cancer-free controls and 1 cancer-free control with a history of benign breast disease (BBD).

resultsPromoter methylation analysis of four cancer-related genes: -RASSF1A, GSTP1, APC and RARβ2, - was conducted using quantitative methylation-specific PCR. Results showed that the frequency of methylation was lower than expected among cases and higher than expected among controls. Methylation was detected in the promoter region of: RASSF1A in 22.0%, 22.9% and 17.2% of cases, BBD controls and healthy controls respectively; GSTP1 in 4%, 10.4% and 7.1% respectively; APC in 2.0%, 4.4% and 4.2% respectively and RARβ2 in 6.7%, 2.3% and 1.1% respectively.

conclusionMethylation status of the four genes included in this study was unable to distinguish between cases and either control group. This study highlights some methodological issues to be addressed in planning prospective studies to evaluate methylation markers as diagnostic biomarkers.

Indexed as

DNA MethylationAdultAgedBiomarkers, TumorBreast NeoplasmsCase-Control StudiesCohort StudiesEarly Detection of CancerFemaleFollow-Up StudiesHumansMiddle AgedPolymerase Chain ReactionPromoter Regions, GeneticProspective StudiesBiomarkers, Tumor

Identifiers

PMID20627767
PMCPMC2956002
OpenAlexW2161272078

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.