Evidence map›Paper›PMID 20625415›Full record

ArticleJournal of biomedicine & biotechnology2010

Transcriptome analysis of the phytobacterium Xylella fastidiosa growing under xylem-based chemical conditions.

Maristela Boaceff Ciraulo, Daiene Souza Santos, Ana Claudia de Freitas Oliveira Rodrigues, Marcus Vinícius de Oliveira, Tiago Rodrigues, Regina Costa de Oliveira, Luiz R Nunes

Abstract read
In one paragraph

Article in Journal of biomedicine & biotechnology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Preliminary transcriptomic analyses revealFrontiers in microbiology · 2025
    Article
  2. Article
  3. Genome-guided comparativeFrontiers in plant science · 2022
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maristela Boaceff CirauloNúcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes, Avenida Dr. Cândido Xavier de Almeida Souza 200, Mogi das Cruzes SP, Brazil.
Daiene Souza Santos
Ana Claudia de Freitas Oliveira Rodrigues
Marcus Vinícius de Oliveira
Tiago Rodrigues
Regina Costa de Oliveira
Luiz R Nunes

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylella fastidiosa is a xylem-limited bacterium responsible for important plant diseases, like citrus-variegated chlorosis (CVC) and grapevine Pierce's disease (PD). Interestingly, in vitro growth of X. fastidiosa in chemically defined media that resemble xylem fluid has been achieved, allowing studies of metabolic processes used by xylem-dwelling bacteria to thrive in such nutrient-poor conditions. Thus, we performed microarray hybridizations to compare transcriptomes of X. fastidiosa cells grown in 3G10-R, a medium that resembles grape sap, and in Periwinkle Wilt (PW), the complex medium traditionally used to cultivate X. fastidiosa. We identified 299 transcripts modulated in response to growth in these media. Some 3G10R-overexpressed genes have been shown to be upregulated in cells directly isolated from infected plants and may be involved in plant colonization, virulence and environmental competition. In contrast, cells cultivated in PW show a metabolic switch associated with increased aerobic respiration and enhanced bacterial growth rates.

Indexed as

Gene Expression ProfilingAerobiosisCulture MediaElectron TransportGene Expression Regulation, BacterialGenes, BacterialReverse Transcriptase Polymerase Chain ReactionTranscription, GeneticUp-RegulationXylellaXylemCulture Media

Identifiers

PMID20625415
PMCPMC2896883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.