Evidence map›Paper›PMID 20624740›Full record

ArticleGenome biology and evolution2010

Evolution of a bitter taste receptor gene cluster in a New World sparrow.

Jamie K Davis, Josh J Lowman, Pamela J Thomas, Boudewijn F H ten Hallers, Maxim Koriabine, Lynn Y Huynh, Donna L Maney, Pieter J de Jong, Christa L Martin, NISC Comparative Sequencing Program and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. The avian taste system.Frontiers in physiology · 2023
    Review
  8. Bitter taste receptors of the zebra finch (Frontiers in physiology · 2023
    Article
  9. Article
  10. Article
  11. Bitter taste receptors: Genes, evolution and health.Evolution, medicine, and public health · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Genetics of taste receptors.Current pharmaceutical design · 2014
    Review
  18. BitterDB: a database of bitter compounds.Nucleic acids research · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jamie K DavisDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.
Josh J Lowman
Pamela J Thomas
Boudewijn F H ten Hallers
Maxim Koriabine
Lynn Y Huynh
Donna L Maney
Pieter J de Jong
Christa L Martin
NISC Comparative Sequencing Program
James W Thomas
Emory University · USNational Institutes of Health · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Genomic Resources for an Animal Model of Social BehaviorR21MH082046 · NIMH · EMORY UNIVERSITY · PI THOMAS, JAMES W · 2008 to 2009
$379k
Intramural NIH HHSNIMH NIH HHS 1R21MH082046NIMH NIH HHS R21 MH082046
6 · The paper itself

Abstract

Bitter taste perception likely evolved as a protective mechanism against the ingestion of harmful compounds in food. The evolution of the taste receptor type 2 (TAS2R) gene family, which encodes the chemoreceptors that are directly responsible for the detection of bitter compounds, has therefore been of considerable interest. Though TAS2R repertoires have been characterized for a number of species, to date the complement of TAS2Rs from just one bird, the chicken, which had a notably small number of TAS2Rs, has been established. Here, we used targeted mapping and genomic sequencing in the white-throated sparrow (Zonotrichia albicollis) and sample sequencing in other closely related birds to reconstruct the history of a TAS2R gene cluster physically linked to the break points of an evolutionary chromosomal rearrangement. In the white-throated sparrow, this TAS2R cluster encodes up to 18 functional bitter taste receptors and likely underwent a large expansion that predates and/or coincides with the radiation of the Emberizinae subfamily into the New World. In addition to signatures of gene birth-and-death evolution within this cluster, estimates of Ka/Ks for the songbird TAS2Rs were similar to those previously observed in mammals, including humans. Finally, comparison of the complete genomic sequence of the cluster from two common haplotypes in the white-throated sparrow revealed a number of nonsynonymous variants and differences in functional gene content within this species. These results suggest that interspecies and intraspecies genetic variability does exist in avian TAS2Rs and that these differences could contribute to variation in bitter taste perception in birds.

Indexed as

Evolution, MolecularMultigene FamilyAmino Acid SequenceAnimalsChromosome BreakageChromosome InversionChromosome MappingChromosomes, Artificial, BacterialFinchesGene DuplicationGene RearrangementGenetic LinkageGenetic VariationHaplotypesMolecular Sequence DataPhylogenyReceptors, G-Protein-CoupledTaste Receptors, Type 2

Identifiers

PMID20624740
PMCPMC2942037
OpenAlexW2136803618

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.