Evidence map›Paper›PMID 20624734›Full record

ArticleGenome biology and evolution2010

PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer.

Heidi J T Pagan, Jeremy D Smith, Robert M Hubley, David A Ray

Abstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Evolution ofInsects · 2023
    Article
  7. Functional Characterization of the N-Terminal Disordered Region of theInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Mammalian transposable elements and their impacts on genome evolution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Heidi J T PaganDepartment of Biology, West Virginia University, USA.
Jeremy D Smith
Robert M Hubley
David A Ray

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To better understand the extent of Class II transposable element activity in mammals, we investigated the mouse lemur, Microcebus murinus, whole genome shotgun (2X) draft assembly. Analysis of this strepsirrhine primate extended previous research that targeted anthropoid primates and found no activity within the last 37 Myr. We tested the hypothesis that members of the piggyBac Class II superfamily have been inactive in the strepsirrhine lineage of primates during the same period. Evidence against this hypothesis was discovered in the form of three nonautonomous piggyBac elements with activity periods within the past 40 Myr and possibly into the very recent past. In addition, a novel family of piggyBac transposons was identified, suggesting introduction via horizontal transfer. A second autonomous element was also found with high similarity to an element recently described from the little brown bat, Myotis lucifugus, further implicating horizontal transfer in the evolution of this genome. These findings indicate a more complex history of transposon activity in mammals rather than a uniform shutdown of Class II transposition, which had been suggested by analyses of more common model organisms.

Indexed as

Gene Transfer, HorizontalAmino Acid SequenceAnimalsBase SequenceCheirogaleidaeDNA PrimersDNA Transposable ElementsEvolution, MolecularGenomeModels, GeneticMolecular Sequence DataPhylogenyPrimatesSequence Homology, Amino AcidSequence Homology, Nucleic AcidTime FactorsDNA PrimersDNA Transposable Elements

Identifiers

PMID20624734
PMCPMC2997546

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.