Evidence map›Paper›PMID 20624651›Full record

ArticleThe Journal of allergy and clinical immunology2010

Functional variants of the sphingosine-1-phosphate receptor 1 gene associate with asthma susceptibility.

Xiaoguang Sun, Shwu-Fan Ma, Michael S Wade, Carlos Flores, Maria Pino-Yanes, Jaideep Moitra, Carole Ober, Rick Kittles, Aliya N Husain, Jean G Ford and 1 more

Abstract readMulticenter Study
In one paragraph

Article in The Journal of allergy and clinical immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Hyperoxia-induced S1PCell biochemistry and biophysics · 2021
    Article
  6. Article
  7. Lysolipids in Vascular Development, Biology, and Disease.Arteriosclerosis, thrombosis, and vascular biology · 2021
    Review
  8. Lysophospholipids in Lung Inflammatory Diseases.Advances in experimental medicine and biology · 2021
    Article
  9. Review
  10. Review
  11. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Xiaoguang SunSection of Pulmonary and Critical Care Medicine, Department of Medicine, University of Chicago, Chicago, Ill, USA.
Shwu-Fan Ma
Michael S Wade
Carlos Flores
Maria Pino-Yanes
Jaideep Moitra
Carole Ober
Rick Kittles
Aliya N Husain
Jean G Ford
Joe G N Garcia
University of Chicago · USHospital Universitario Nuestra Señora de Candelaria · ESInstituto de Salud Carlos III · ESJohns Hopkins University · US

Funding

Tissue Culture Biomechanical CoreP01HL058064 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LAL, RATNESHWAR · 1998 to 2012
$27.8M
ZOLEDRONATE &OSTEOPOROTIC EFFECTS OF ANDROGEN DEPRIVATIM01RR000055 · NCRR · UNIVERSITY OF CHICAGO · PI DE WIT, HARRIET · 1985 to 2007
$19.0M
CLINICAL THERAPEUTICST32GM007019 · NIGMS · UNIVERSITY OF CHICAGO · PI Peter Hugh O'Donnell, MARK J RATAIN · 1985 to 2026
$8.7M
Positional Cloning of a 6p-linked Asthma GeneR01HL072414 · NHLBI · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 2003 to 2007
$3.0M
LINKAGE STUDIES OF ASTHMA--SEARCH FOR SUSCEPTIBILITY LOCU01HL049596 · NHLBI · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 1992 to 2001
$1.6M
DECREASING THE NEED FOR EMERGENCY ASTHMA CARE IN HARLEMR01HL051492 · NHLBI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FORD, JEAN G. · 1993 to 1997
–
NCRR NIH HHS M01 RR000055NHLBI NIH HHS HL51492NHLBI NIH HHS HL58064NHLBI NIH HHS HL91899NHLBI NIH HHS P01 HL058064NHLBI NIH HHS R01 HL072414NIGMS NIH HHS GM07019NIGMS NIH HHS T32 GM007019
6 · The paper itself

Abstract

backgroundThe genetic mechanisms underlying asthma remain unclear. Increased permeability of the microvasculature is a feature of asthma, and the sphingosine-1-phosphate receptor (S1PR1) is an essential participant regulating lung vascular integrity and responses to lung inflammation.

objectiveWe explored the contribution of polymorphisms in the S1PR1 gene to asthma susceptibility.

methodsA combination of gene resequencing for single nucleotide polymorphism (SNP) discovery, case-control association, functional evaluation of associated SNPs, and protein immunochemistry studies was used.

resultsImmunohistochemistry studies demonstrated significantly decreased S1PR1 protein expression in pulmonary vessels in lungs of asthmatic patients compared with those of nonasthmatic subjects (P < .05). Direct DNA sequencing of 27 multiethnic samples identified 39 S1PR1 variants (18 novel SNPs). Association studies were performed based on genotyping results from cosmopolitan tagging SNPs in 3 case-control cohorts from Chicago and New York totaling 1,061 subjects (502 cases and 559 control subjects). The promoter SNP rs2038366 (-1557G/T) was found to be associated with asthma (P = .03) in European Americans. In African Americans an association was found for both asthma and severe asthma for intronic SNP rs3753194 (c.-164+170A/G; P = .006 and P = .040, respectively) and for promoter SNP rs59317557 (-532C/G) with severe asthma (P = .028). Consistent with predicted in silico functionality, alleles of the promoter SNPs rs2038366 (-1557G/T) and rs59317557 (-532C/G) influenced the activity of a luciferase S1PR1 reporter vector in transfected endothelial cells exposed to growth factors (epidermal growth factor, platelet-derived growth factor, and vascular endothelial growth factor) known to be increased in asthmatic airways.

conclusionThese data provide strong support for a role for S1PR1 gene variants in asthma susceptibility and severity.

Indexed as

AllelesPolymorphism, Single NucleotideAsthmaBlack or African AmericanCase-Control StudiesCell LineChicagoFemaleGene Expression RegulationGenetic Predisposition to DiseaseGenotypeHumansImmunohistochemistryIntercellular Signaling Peptides and ProteinsLungMaleIntercellular Signaling Peptides and ProteinsReceptors, LysosphingolipidS1PR1 protein, humanSphingosine-1-Phosphate Receptors

Identifiers

PMID20624651
PMCPMC3495167
OpenAlexW2010599249

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.