Evidence map›Paper›PMID 20622876›Full record

ArticleNature structural & molecular biology2010

Conserved structural elements in the V3 crown of HIV-1 gp120.

Xunqing Jiang, Valicia Burke, Maxim Totrov, Constance Williams, Timothy Cardozo, Miroslaw K Gorny, Susan Zolla-Pazner, Xiang-Peng Kong

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

  1. Trial
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  5. In vivo evolution of env in SHIV-AD8Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
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  15. Article
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  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xunqing JiangDepartment of Biochemistry, New York University School of Medicine, New York, New York, USA.
Valicia Burke
Maxim Totrov
Constance Williams
Timothy Cardozo
Miroslaw K Gorny
Susan Zolla-Pazner
Xiang-Peng Kong

Funding

VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GORNY, MIROSLAW K · 1989 to 2010
$19.4M
PROTECTIVE HUMAN MONOCLONAL ANTIBODIES TO HIV1R01HL059725 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1997 to 2014
$8.8M
IMMUNOLOGIC RELATEDNESS AMONG AND BETWEEN HIV-1 SUBTYPESR01AI036085 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1994 to 2008
$5.3M
NHLBI NIH HHS HL59725NIAID NIH HHS AI27742NIAID NIH HHS AI36085
6 · The paper itself

Abstract

Binding of the third variable region (V3) of the HIV-1 envelope glycoprotein gp120 to the cell-surface coreceptors CCR5 or CXCR4 during viral entry suggests that there are conserved structural elements in this sequence-variable region. These conserved elements could serve as epitopes to be targeted by a vaccine against HIV-1. Here we perform a systematic structural analysis of representative human anti-V3 monoclonal antibodies in complex with V3 peptides, revealing that the crown of V3 has four conserved structural elements: an arch, a band, a hydrophobic core and the peptide backbone. These are either unaffected by or are subject to minimal sequence variation. As these regions are targeted by cross-clade neutralizing human antibodies, they provide a blueprint for the design of vaccine immunogens that could elicit broadly cross-reactive protective antibodies.

Indexed as

Conserved SequenceAmino Acid SequenceAntibodies, MonoclonalAntibody SpecificityCrystallography, X-RayEpitopesHIV Envelope Protein gp120HumansHydrophobic and Hydrophilic InteractionsImmunoglobulin FragmentsModels, MolecularMolecular Sequence DataPeptidesProtein Structure, SecondaryProtein Structure, TertiarySequence AlignmentAntibodies, MonoclonalEpitopesHIV Envelope Protein gp120Immunoglobulin FragmentsPeptides

Identifiers

PMID20622876

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.