ArticleThe Plant cell2010
Natural variation of transcriptional auxin response networks in Arabidopsis thaliana.
Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.
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Who cites it
39 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.
- Ambient temperature and genotype differentially affect developmental and phenotypic plasticity in Arabidopsis thaliana.BMC plant biology · 2017Pooled it
- Classical Phytohormones and Peptide Plant Hormones in Abiotic Stress Tolerance: Crosstalk, Physiological Integration, and Crop Improvement.Plants (Basel, Switzerland) · 2026Review
- Advancing ecological and evolutionary research in Arabidopsis: Extending insights into model and nonmodel plants.The Plant cell · 2025Review
- Computational Reconstruction of the Transcription Factor Regulatory Network Induced by Auxin inPlants (Basel, Switzerland) · 2024Article
- Heterologous expression of Arabidopsis thaliana rty gene in strawberry (Fragaria × ananassa Duch.) improves drought tolerance.BMC plant biology · 2021Article
- Natural Variation in Plant Pluripotency and Regeneration.Plants (Basel, Switzerland) · 2020Review
- The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium inMolecular & cellular proteomics : MCP · 2020Article
- Auxin-induced actin cytoskeleton rearrangements require AUX1.The New phytologist · 2020Article
- Article
- Accelerating structure-function mapping using the ViVa webtool to mine natural variation.Plant direct · 2019Article
- Article
- Natural genetic variation shapes root system responses to phytohormones in Arabidopsis.The Plant journal : for cell and molecular biology · 2018Article
- Natural variation of hormone levels in Arabidopsis roots and correlations with complex root architecture.Journal of integrative plant biology · 2018Article
- Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana.Journal of experimental botany · 2018Review
- Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.BMC plant biology · 2017Article
- Article
- Molecular Profiles of Contrasting Shade Response Strategies in Wild Plants: Differential Control of Immunity and Shoot Elongation.The Plant cell · 2017Article
- Evolution of herbivore-induced early defense signaling was shaped by genome-wide duplications ineLife · 2016Article
- Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture.The Plant cell · 2016Article
- Retrieving relevant time-course experiments: a study on Arabidopsis microarrays.IET systems biology · 2016Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Natural variation has been observed for various traits in Arabidopsis thaliana. Here, we investigated natural variation in the context of physiological and transcriptional responses to the phytohormone auxin, a key regulator of plant development. A survey of the general extent of natural variation to auxin stimuli revealed significant physiological variation among 20 genetically diverse natural accessions. Moreover, we observed dramatic variation on the global transcriptome level after induction of auxin responses in seven accessions. Although we detect isolated cases of major-effect polymorphisms, sequencing of signaling genes revealed sequence conservation, making selective pressures that favor functionally different protein variants among accessions unlikely. However, coexpression analyses of a priori defined auxin signaling networks identified variations in the transcriptional equilibrium of signaling components. In agreement with this, cluster analyses of genome-wide expression profiles followed by analyses of a posteriori defined gene networks revealed accession-specific auxin responses. We hypothesize that quantitative distortions in the ratios of interacting signaling components contribute to the detected transcriptional variation, resulting in physiological variation of auxin responses among accessions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.