Evidence map›Paper›PMID 20622017›Full record

ArticleThe Journal of biological chemistry2010

Analysis of site-specific glycosylation of renal and hepatic γ-glutamyl transpeptidase from normal human tissue.

Matthew B West, Zaneer M Segu, Christa L Feasley, Pilsoo Kang, Iveta Klouckova, Chenglong Li, Milos V Novotny, Christopher M West, Yehia Mechref, Marie H Hanigan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 48 citations in OpenAlex.

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  9. Restricted processing of CD16a/Fc γ receptor IIIaThe Journal of biological chemistry · 2018
    Article
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  14. Tissue-Specific Glycosylation at the Glycopeptide Level.Molecular & cellular proteomics : MCP · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Matthew B WestDepartment of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104, USA.
Zaneer M Segu
Christa L Feasley
Pilsoo Kang
Iveta Klouckova
Chenglong Li
Milos V Novotny
Christopher M West
Yehia Mechref
Marie H Hanigan
Indiana University Bloomington · USUniversity of Oklahoma Health Sciences Center · USThe Ohio State University · USUniversity of Oklahoma Medical Center · US

Funding

TRAININGP41RR018942 · NCRR · TRUSTEES OF INDIANA UNIVERSITY · PI MALKAS, LINDA H. · 2005 to 2008
$3.9M
SIGNIFICANCE OF GGT EXPRESSION IN TUMORSR01CA057530 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HANIGAN, MARIE H · 1992 to 2008
$1.9M
Chemistry-Biology Interface Training Program at the University of FloridaT32GM136583 · NIGMS · UNIVERSITY OF FLORIDA · PI Chenglong Li · 2020 to 2026
$1.1M
Significance of GGT Expression in TumorsR56CA057530 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HANIGAN, MARIE H · 2009 to 2009
$238k
Tissue and Tumor Specific Glycosylation of ProteinsF32CA128338 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEST, MATTHEW · 2007 to 2009
$148k
NCI NIH HHS F32 CA128338NCI NIH HHS F32CA128338NCI NIH HHS R01 CA057530NCI NIH HHS R01CA57530NCI NIH HHS R56 CA057530NCI NIH HHS R56CA057530NCRR NIH HHS P41 RR018942NCRR NIH HHS RR018942NIGMS NIH HHS T32 GM136583
6 · The paper itself

Abstract

The cell surface glycoprotein γ-glutamyl transpeptidase (GGT) was isolated from healthy human kidney and liver to characterize its glycosylation in normal human tissue in vivo. GGT is expressed by a single cell type in the kidney. The spectrum of N-glycans released from kidney GGT constituted a subset of the N-glycans identified from renal membrane glycoproteins. Recent advances in mass spectrometry enabled us to identify the microheterogeneity and relative abundance of glycans on specific glycopeptides and revealed a broader spectrum of glycans than was observed among glycans enzymatically released from isolated GGT. A total of 36 glycan compositions, with 40 unique structures, were identified by site-specific glycan analysis. Up to 15 different glycans were observed at a single site, with site-specific variation in glycan composition. N-Glycans released from liver membrane glycoproteins included many glycans also identified in the kidney. However, analysis of hepatic GGT glycopeptides revealed 11 glycan compositions, with 12 unique structures, none of which were observed on kidney GGT. No variation in glycosylation was observed among multiple kidney and liver donors. Two glycosylation sites on renal GGT were modified exclusively by neutral glycans. In silico modeling of GGT predicts that these two glycans are located in clefts on the surface of the protein facing the cell membrane, and their synthesis may be subject to steric constraints. This is the first analysis at the level of individual glycopeptides of a human glycoprotein produced by two different tissues in vivo and provides novel insights into tissue-specific and site-specific glycosylation in normal human tissues.

Indexed as

AgedAmino Acid SequenceBlotting, WesternElectrophoresis, Polyacrylamide GelFemalegamma-GlutamyltransferaseGlycosylationHumansIn Vitro TechniquesKidneyLiverMiddle AgedMolecular Sequence DataSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass Spectrometrygamma-Glutamyltransferase

Identifiers

PMID20622017
PMCPMC2937983
OpenAlexW2077878765

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.