Evidence map›Paper›PMID 20621490›Full record

ArticleBioorganic & medicinal chemistry2010

Affinity of aporphines for the human 5-HT2A receptor: insights from homology modeling and molecular docking studies.

Stevan Pecic, Pooja Makkar, Sandeep Chaudhary, Boojala V Reddy, Hernan A Navarro, Wayne W Harding

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Identification of C10 nitrogen-containing aporphines with dopamine DBioorganic & medicinal chemistry letters · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. C4 phenyl aporphines with selective h5-HT(2B) receptor affinity.Bioorganic & medicinal chemistry letters · 2015
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Stevan PecicDepartment of Chemistry, Hunter College, City University of New York, 695 Park Avenue, New York, NY 10065, USA.
Pooja Makkar
Sandeep Chaudhary
Boojala V Reddy
Hernan A Navarro
Wayne W Harding
City University of New York · USQueens College, CUNY · USHunter College · USRTI International · US

Funding

WILD TYPE &MUTANT P53 INTERACTIONS WITH HIV LTR DNAG12RR003037 · NCRR · HUNTER COLLEGE · PI DOTTIN, ROBERT P · 1985 to 2011
$27.6M
Synthesis and Evaluation of Aporphines as MDMA Antagonists.R03DA025910 · NIDA · HUNTER COLLEGE · PI HARDING, WAYNE WESLEY · 2009 to 2010
$407k
NCRR NIH HHS G12 RR003037NCRR NIH HHS RR003037NIDA NIH HHS R03 DA025910NIDA NIH HHS R03DA025910
6 · The paper itself

Abstract

Analogs of nantenine were docked into a modeled structure of the human 5-HT(2A) receptor using ICM Pro, GLIDE, and GOLD docking methods. The resultant docking scores were used to correlate with observed in vitro apparent affinity (K(e)) data. The GOLD docking algorithm when used with a homology model of 5-HT(2A), based on a bovine rhodopsin template and built by the program MODELLER, gives results which are most in agreement with the in vitro results. Further analysis of the docking poses among members of a C1 alkyl series of nantenine analogs, indicate that they bind to the receptor in a similar orientation, but differently than nantenine. Besides an important interaction between the protonated nitrogen of the C1 alkyl analogs and residue Asp155, we identified Ser242, Phe234, and Gly238 as key residues responsible for the affinity of these compounds for the 5-HT(2A) receptor. Specifically, the ability of some of these analogs to establish a H-bond with Ser242 and hydrophobic interactions with Phe234 and Gly238 appears to explain their enhanced affinity as compared to nantenine.

Indexed as

AlgorithmsAnimalsAporphinesBinding SitesCattleComputer SimulationHumansModels, MolecularReceptor, Serotonin, 5-HT2ARhodopsinStructure-Activity RelationshipThermodynamicsAporphinesnantenineReceptor, Serotonin, 5-HT2ARhodopsin

Identifiers

PMID20621490
PMCPMC2918227
OpenAlexW1968571103

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.