Evidence map›Paper›PMID 20616156›Full record

ArticleJournal of experimental botany2010

Duplicate polyphenol oxidase genes on barley chromosome 2H and their functional differentiation in the phenol reaction of spikes and grains.

Shin Taketa, Kanako Matsuki, Satoko Amano, Daisuke Saisho, Eiko Himi, Naoki Shitsukawa, Takahisa Yuo, Kazuhiko Noda, Kazuyoshi Takeda

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  5. Polyphenol oxidase genes in barley (Frontiers in plant science · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Frontiers in plant science · 2022
    Article
  10. Article
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  13. Genomic Variation Among and Within SixG3 (Bethesda, Md.) · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Marker-trait associations in Virginia Tech winter barley identified using genome-wide mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Shin TaketaInstitute of Plant Science and Resources, 2-20-1 Chuo, Okayama University, Kurashiki 710-0046, Japan. staketa@rib.okayama-u.ac.jp
Kanako Matsuki
Satoko Amano
Daisuke Saisho
Eiko Himi
Naoki Shitsukawa
Takahisa Yuo
Kazuhiko Noda
Kazuyoshi Takeda
Okayama University · JPKagawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyphenol oxidases (PPOs) are copper-containing metalloenzymes encoded in the nucleus and transported into the plastids. Reportedly, PPOs cause time-dependent discoloration (browning) of end-products of wheat and barley, which impairs their appearance quality. For this study, two barley PPO homologues were amplified using PCR with a primer pair designed in the copper binding domains of the wheat PPO genes. The full-lengths of the respective PPO genes were cloned using a BAC library, inverse-PCR, and 3'-RACE. Linkage analysis showed that the polymorphisms in PPO1 and PPO2 co-segregated with the phenol reaction phenotype of awns. Subsequent RT-PCR experiments showed that PPO1 was expressed in hulls and awns, and that PPO2 was expressed in the caryopses. Allelic variation of PPO1 and PPO2 was analysed in 51 barley accessions with the negative phenol reaction of awns. In PPO1, amino acid substitutions of five types affecting functionally important motif(s) or C-terminal region(s) were identified in 40 of the 51 accessions tested. In PPO2, only one mutant allele with a precocious stop codon resulting from an 8 bp insertion in the first exon was found in three of the 51 accessions tested. These observations demonstrate that PPO1 is the major determinant controlling the phenol reaction of awns. Comparisons of PPO1 single mutants and the PPO1PPO2 double mutant indicate that PPO2 controls the phenol reaction in the crease on the ventral side of caryopses. An insertion of a hAT-family transposon in the promoter region of PPO2 may be responsible for different expression patterns of the duplicate PPO genes in barley.

Indexed as

AllelesCatechol OxidaseChromosomes, PlantEdible GrainGene LibraryHordeumPhenolsPlant ProteinsPolymerase Chain ReactionCatechol OxidasePhenolsPlant Proteins

Identifiers

PMID20616156
PMCPMC2935872
OpenAlexW2115957119

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.