Evidence map›Paper›PMID 20614028›Full record

ArticlePloS one2010

Iterative structure-based peptide-like inhibitor design against the botulinum neurotoxin serotype A.

Jorge E Zuniga, Jared T Hammill, Omri Drory, Jonathan E Nuss, James C Burnett, Rick Gussio, Peter Wipf, Sina Bavari, Axel T Brunger

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Jorge E ZunigaHoward Hughes Medical Institute and Department of Molecular and Cellular Physiology, Stanford University, Stanford, California, United States of America.
Jared T Hammill
Omri Drory
Jonathan E Nuss
James C Burnett
Rick Gussio
Peter Wipf
Sina Bavari
Axel T Brunger
Stanford University · USUniversity of Pittsburgh · USFrederick National Laboratory for Cancer Research · USScience Applications International Corporation (United States) · USTarget (United States) · USUnited States Army Medical Research Institute of Infectious Diseases · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The botulinum neurotoxin serotype A light chain (BoNT/A LC) protease is the catalytic component responsible for the neuroparalysis that is characteristic of the disease state botulism. Three related peptide-like molecules (PLMs) were designed using previous information from co-crystal structures, synthesized, and assayed for in vitro inhibition against BoNT/A LC. Our results indicate these PLMS are competitive inhibitors of the BoNT/A LC protease and their K(i) values are in the nM-range. A co-crystal structure for one of these inhibitors was determined and reveals that the PLM, in accord with the goals of our design strategy, simultaneously involves both ionic interactions via its P1 residue and hydrophobic contacts by means of an aromatic group in the P2' position. The PLM adopts a helical conformation similar to previously determined co-crystal structures of PLMs, although there are also major differences to these other structures such as contacts with specific BoNT/A LC residues. Our structure further demonstrates the remarkable plasticity of the substrate binding cleft of the BoNT/A LC protease and provides a paradigm for iterative structure-based design and development of BoNT/A LC inhibitors.

Indexed as

Botulinum Toxins, Type ACatalysisCrystallizationCrystallography, X-RayEnzyme InhibitorsModels, MolecularPeptidesProtein ConformationSubstrate SpecificityBotulinum Toxins, Type AEnzyme InhibitorsPeptides

Identifiers

PMID20614028
PMCPMC2894858
OpenAlexW2151971963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.