ArticleJournal of virology2010
Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses.
Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
29 citing papers in PubMed.
- Broad geographical circulation of a novel vesiculovirus in bats in the Mediterranean region.PLoS neglected tropical diseases · 2025Article
- Characterisation of putative novel tick viruses and zoonotic risk prediction.Ecology and evolution · 2024Article
- Article
- Update on Potentially Zoonotic Viruses of European Bats.Vaccines · 2021Review
- Potential role of viral metagenomics as a surveillance tool for the early detection of emerging novel pathogens.Archives of microbiology · 2021Review
- Revisiting the genetic diversity of emerging hantaviruses circulating in Europe using a pan-viral resequencing microarray.Scientific reports · 2019Article
- A resequencing pathogen microarray method for high-throughput molecular diagnosis of multiple etiologies associated with central nervous system infection.Archives of virology · 2017Article
- Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus.Genome biology and evolution · 2017Article
- Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genusEvolutionary bioinformatics online · 2017Review
- Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts.PLoS pathogens · 2016Article
- Review
- Sunguru virus: a novel virus in the family Rhabdoviridae isolated from a chicken in north-western Uganda.The Journal of general virology · 2014Article
- Gene duplication and phylogeography of North American members of the Hart Park serogroup of avian rhabdoviruses.Virology · 2014Article
- A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses.PloS one · 2014Article
- Resequencing microarray technology for genotyping human papillomavirus in cervical smears.PloS one · 2014Article
- Kolente virus, a rhabdovirus species isolated from ticks and bats in the Republic of Guinea.The Journal of general virology · 2013Article
- Pathogen chip for respiratory tract infections.Journal of clinical microbiology · 2013Article
- Molecular diagnostic and genetic characterization of highly pathogenic viruses: application during Crimean-Congo haemorrhagic fever virus outbreaks in Eastern Europe and the Middle East.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2013Article
- Article
- Multipurpose instantaneous microarray detection of acute encephalitis causing viruses and their expression profiles.Current microbiology · 2012Review
Corrections and comments
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Authors and funding
18 authors.
Funding
Abstract
The rapid and accurate identification of pathogens is critical in the control of infectious disease. To this end, we analyzed the capacity for viral detection and identification of a newly described high-density resequencing microarray (RMA), termed PathogenID, which was designed for multiple pathogen detection using database similarity searching. We focused on one of the largest and most diverse viral families described to date, the family Rhabdoviridae. We demonstrate that this approach has the potential to identify both known and related viruses for which precise sequence information is unavailable. In particular, we demonstrate that a strategy based on consensus sequence determination for analysis of RMA output data enabled successful detection of viruses exhibiting up to 26% nucleotide divergence with the closest sequence tiled on the array. Using clinical specimens obtained from rabid patients and animals, this method also shows a high species level concordance with standard reference assays, indicating that it is amenable for the development of diagnostic assays. Finally, 12 animal rhabdoviruses which were currently unclassified, unassigned, or assigned as tentative species within the family Rhabdoviridae were successfully detected. These new data allowed an unprecedented phylogenetic analysis of 106 rhabdoviruses and further suggest that the principles and methodology developed here may be used for the broad-spectrum surveillance and the broader-scale investigation of biodiversity in the viral world.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.