Evidence map›Paper›PMID 20606017›Full record

ArticleGenome research2010

Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts.

Ricardo DeMarco, William Mathieson, Sophia J Manuel, Gary P Dillon, Rachel S Curwen, Peter D Ashton, Alasdair C Ivens, Matthew Berriman, Sergio Verjovski-Almeida, R Alan Wilson

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
  2. Article
  3. TrueFrontiers in cellular and infection microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. RevisitingBiomolecules · 2023
    Article
  10. Review
  11. Article
  12. Chemical modulation ofWellcome open research · 2023
    Article
  13. Profiling the serum proteome duringFrontiers in immunology · 2022
    Article
  14. Article
  15. An atlas of the germ ball-cercaria-schistosomulum transition inCurrent research in parasitology & vector-borne diseases · 2022
    Article
  16. Review
  17. Article
  18. The Transcriptome ofFrontiers in tropical diseases · 2021
    Article
  19. Article
  20. Transposable Elements in the Genome of Human ParasiteTropical medicine and infectious disease · 2021
    Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ricardo DeMarcoDepartment of Biology, University of York, York YO10 5YW, United Kingdom. rdemarco@ifsc.usp.br
William Mathieson
Sophia J Manuel
Gary P Dillon
Rachel S Curwen
Peter D Ashton
Alasdair C Ivens
Matthew Berriman
Sergio Verjovski-Almeida
R Alan Wilson
University of York · GBUniversidade de São Paulo · BRWellcome Sanger Institute · GB

Funding

New Approaches to Schistosome vaccine antigen discoveryR01AI054711 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KING, CHRISTOPHER L · 2005 to 2008
$1.4M
Biotechnology and Biological Sciences Research CouncilNIAID NIH HHS AI054711-01A2NIAID NIH HHS R01 AI054711Wellcome TrustWellcome Trust WT085775/Z/08/Z
6 · The paper itself

Abstract

Schistosoma mansoni is a well-adapted blood-dwelling parasitic helminth, persisting for decades in its human host despite being continually exposed to potential immune attack. Here, we describe in detail micro-exon genes (MEG) in S. mansoni, some present in multiple copies, which represent a novel molecular system for creating protein variation through the alternate splicing of short (< or =36 bp) symmetric exons organized in tandem. Analysis of three closely related copies of one MEG family allowed us to trace several evolutionary events and propose a mechanism for micro-exon generation and diversification. Microarray experiments show that the majority of MEGs are up-regulated in life cycle stages associated with establishment in the mammalian host after skin penetration. Sequencing of RT-PCR products allowed the description of several alternate splice forms of micro-exon genes, highlighting the potential use of these transcripts to generate a complex pool of protein variants. We obtained direct evidence for the existence of such pools by proteomic analysis of secretions from migrating schistosomula and mature eggs. Whole-mount in situ hybridization and immunolocalization showed that MEG transcripts and proteins were restricted to glands or epithelia exposed to the external environment. The ability of schistosomes to produce a complex pool of variant proteins aligns them with the other major groups of blood parasites, but using a completely different mechanism. We believe that our data open a new chapter in the study of immune evasion by schistosomes, and their ability to generate variant proteins could represent a significant obstacle to vaccine development.

Indexed as

ExonsAlternative SplicingAmino Acid SequenceAnimalsBase SequenceBiological EvolutionHelminth ProteinsMolecular Sequence DataProteomicsSchistosoma mansoniSequence Homology, Amino AcidTranscription, GeneticUp-RegulationHelminth Proteins

Identifiers

PMID20606017
PMCPMC2909574
OpenAlexW2151126541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.