Evidence map›Paper›PMID 20604746›Full record

ArticleThe Biochemical journal2010

Extensive sphingolipid depletion does not affect lipid raft integrity or lipid raft localization and efflux function of the ABC transporter MRP1.

Karin Klappe, Anne-Jan Dijkhuis, Ina Hummel, Annie van Dam, Pavlina T Ivanova, Stephen B Milne, David S Myers, H Alex Brown, Hjalmar Permentier, Jan W Kok

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Lipidomics and in vitro azole resistance in Candida albicans.Omics : a journal of integrative biology · 2013
    Article
  7. Long term myriocin treatment increases MRP1 transport activity.The international journal of biochemistry & cell biology · 2013
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Karin KlappeDepartment of Cell Biology, University Medical Center Groningen, The Netherlands.
Anne-Jan Dijkhuis
Ina Hummel
Annie van Dam
Pavlina T Ivanova
Stephen B Milne
David S Myers
H Alex Brown
Hjalmar Permentier
Jan W Kok
University Medical Center Groningen · NLUniversity of Groningen · NL

Funding

STEROL LIPIDSU54GM069338 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 2003 to 2013
$72.2M
NIGMS NIH HHS U54 GM069338
6 · The paper itself

Abstract

We show that highly efficient depletion of sphingolipids in two different cell lines does not abrogate the ability to isolate Lubrol-based DRMs (detergent-resistant membranes) or detergent-free lipid rafts from these cells. Compared with control, DRM/detergent-free lipid raft fractions contain equal amounts of protein, cholesterol and phospholipid, whereas the classical DRM/lipid raft markers Src, caveolin-1 and flotillin display the same gradient distribution. DRMs/detergent-free lipid rafts themselves are severely depleted of sphingolipids. The fatty acid profile of the remaining sphingolipids as well as that of the glycerophospholipids shows several differences compared with control, most prominently an increase in highly saturated C(16) species. The glycerophospholipid headgroup composition is unchanged in sphingolipid-depleted cells and cell-derived detergent-free lipid rafts. Sphingolipid depletion does not alter the localization of MRP1 (multidrug-resistance-related protein 1) in DRMs/detergent-free lipid rafts or MRP1-mediated efflux of carboxyfluorescein. We conclude that extensive sphingolipid depletion does not affect lipid raft integrity in two cell lines and does not affect the function of the lipid-raft-associated protein MRP1.

Indexed as

AnimalsATP-Binding Cassette, Sub-Family C ProteinsBiological TransportCell LineCell Line, TumorCholesterolFatty AcidsFatty Acids, MonounsaturatedFluoresceinsGlycerophospholipidsHumansImmunoblottingLipidsMembrane MicrodomainsPolyethylene GlycolsSpectrometry, Mass, Electrospray Ionization6-carboxyfluoresceinATP-Binding Cassette, Sub-Family C ProteinsCholesterolFatty AcidsFatty Acids, MonounsaturatedFluoresceinsGlycerophospholipidsLipidslubrolmultidrug resistance-associated protein 1Polyethylene GlycolsSphingolipidsthermozymocidin

Identifiers

PMID20604746
PMCPMC3791605
OpenAlexW2065816468

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.