Evidence map›Paper›PMID 20601642›Full record

ArticleThe Journal of biological chemistry2010

Association between the herpes simplex virus-1 DNA polymerase and uracil DNA glycosylase.

Federica Bogani, Ilsa Corredeira, Virneliz Fernandez, Ulrike Sattler, Wiriya Rutvisuttinunt, Martine Defais, Paul E Boehmer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

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  20. Argininosuccinate synthetase 1 depletion produces a metabolic state conducive to herpes simplex virus 1 infection.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Federica BoganiDepartment of Basic Medical Sciences, The University of Arizona College of Medicine, Phoenix, Arizona 85004, USA.
Ilsa Corredeira
Virneliz Fernandez
Ulrike Sattler
Wiriya Rutvisuttinunt
Martine Defais
Paul E Boehmer
University of Arizona · USInstitut de Pharmacologie et de Biologie Structurale · FR

Funding

MOLECULAR EVENTS AT THE HSV-1 ORIGIN OF DNA REPLICATIONR01GM062643 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BOEHMER, PAUL E · 2000 to 2010
$2.2M
NIGMS NIH HHS GM62643NIGMS NIH HHS R01 GM062643
6 · The paper itself

Abstract

Herpes simplex virus-1 (HSV-1) is a large dsDNA virus that encodes its own DNA replication machinery and other enzymes involved in DNA transactions. We recently reported that the HSV-1 DNA polymerase catalytic subunit (UL30) exhibits apurinic/apyrimidinic and 5'-deoxyribose phosphate lyase activities. Moreover, UL30, in conjunction with the viral uracil DNA glycosylase (UL2), cellular apurinic/apyrimidinic endonuclease, and DNA ligase IIIalpha-XRCC1, performs uracil-initiated base excision repair. Base excision repair is required to maintain genome stability as a means to counter the accumulation of unusual bases and to protect from the loss of DNA bases. Here we show that the HSV-1 UL2 associates with the viral replisome. We identified UL2 as a protein that co-purifies with the DNA polymerase through numerous chromatographic steps, an interaction that was verified by co-immunoprecipitation and direct binding studies. The interaction between UL2 and the DNA polymerase is mediated through the UL30 subunit. Moreover, UL2 co-localizes with UL30 to nuclear viral prereplicative sites. The functional consequence of this interaction is that replication of uracil-containing templates stalls at positions -1 and -2 relative to the template uracil because of the fact that these are converted into non-instructional abasic sites. These findings support the existence of a viral repair complex that may be capable of replication-coupled base excision repair and further highlight the role of DNA repair in the maintenance of the HSV-1 genome.

Indexed as

Catalytic DomainDNA-Directed DNA PolymeraseDNA RepairDNA ReplicationDNA, ViralGenome, ViralHerpesvirus 1, HumanMultienzyme ComplexesProtein BindingProtein TransportReplisomesUracil-DNA GlycosidaseVirus ReplicationDNA-Directed DNA PolymeraseDNA, ViralMultienzyme ComplexesReplisomesUracil-DNA Glycosidase

Identifiers

PMID20601642
PMCPMC2934634
OpenAlexW2023491723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.