Evidence map›Paper›PMID 20600629›Full record

ArticleBiochimica et biophysica acta2010

Selective detection of Cathepsin E proteolytic activity.

Wael R Abd-Elgaliel, Ching-Hsuan Tung

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Cathepsin E expression and activity: Role in the detection and treatment of pancreatic cancer.Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] · 2019
    Review
  2. Article
  3. Article
  4. Global Protease Activity Profiling Provides Differential Diagnosis of Pancreatic Cysts.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  5. Article
  6. Article
  7. Pancreatic cancer-associated Cathepsin E as a drug activator.Journal of controlled release : official journal of the Controlled Release Society · 2013
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Wael R Abd-ElgalielDepartment of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, TX, USA.
Ching-Hsuan Tung
Cornell University · US

Funding

Dendritic nanomedicine for cancer imaging and treatmentR01CA135312 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI TUNG, CHING-HSUAN · 2008 to 2012
$1.5M
Imaging tumor associated fibroblast activation proteinR33CA114149 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI TUNG, CHING-HSUAN · 2006 to 2008
$1.0M
Imaging tumor associated fibroblast activation proteinR21CA114149 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI TUNG, CHING-HSUAN · 2005 to 2005
$151k
NCI NIH HHS CA 135312NCI NIH HHS R01 CA135312NCI NIH HHS R21 CA114149NCI NIH HHS R33 CA114149
6 · The paper itself

Abstract

backgroundAspartic proteases Cathepsin (Cath) E and D are two different proteases, but they share many common characteristics, including molecular weight, catalytic mechanism, substrate preferences, proteolytic conditions and inhibition susceptibility. To define the biological roles of these proteases, it is necessary to elucidate their substrate specificity. In the present study, we report a new peptide-substrate that is only sensitive to Cath E but not Cath D.

methodsSubstrate e, Mca-Ala-Gly-Phe-Ser-Leu-Pro-Ala-Lys(Dnp)-DArg-CONH₂, designed in such a way that due to the close proximity of a Mca-donor and a Dnp-acceptor, near complete intramolecular quenching effect was achieved in its intact state. After the proteolytic cleavage of the hydrophobic motif of peptide substrate, both Mca and Dnp would be further apart, resulting in bright fluorescence.

resultsSubstrate e showed a 265 fold difference in the net fluorescence signals between Cath E and D. This Cath E selectivity was established by having -Leu**Pro- residues at the scissile peptide bond. The confined cleavage site of substrate e was confirmed by LC-MS. The catalytic efficiency (K(cat)/K(M)) of Cath E for substrate e was 16.7 μM⁻¹S⁻¹. No measurable catalytic efficiency was observed using Cath D and no detectable fluorescent changes when incubated with Cath S and Cath B.

conclusionsThis study demonstrated the promise of using the developed fluorogenic substrate e as a selective probe for Cath E proteolytic activity measurement. GENERAL SIGNIFICANCE: This study forms the foundation of Cath E specific inhibitor development in further studies.

Indexed as

CatalysisCathepsin DCathepsin EDrug DesignFluorescenceHumansOligopeptidesProtease InhibitorsSubstrate SpecificityCathepsin DCathepsin ECTSD protein, humanCTSE protein, humanOligopeptidesProtease Inhibitors

Identifiers

PMID20600629
PMCPMC2914798
OpenAlexW2016239523

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.