Evidence map›Paper›PMID 20597902›Full record

ArticleAnnals of human genetics2010

Genetic diversity of the fragile X syndrome gene (FMR1) in a large Sub-Saharan West African population.

Emmanuel K Peprah, Emily G Allen, Scott M Williams, Laresa M Woodard, Stephanie L Sherman

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Annals of human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Emmanuel K PeprahDepartment of Human Genetics, Emory University, Atlanta, Georgia 30322, USA. epeprah@emory.edu
Emily G Allen
Scott M Williams
Laresa M Woodard
Stephanie L Sherman
Emory University · USCenter for Human Genetics · US

Funding

IRACDA Fellowships in Research and Science Training (FIRST)K12GM000680 · NIGMS · EMORY UNIVERSITY · PI BROWN, LOU ANN S, MCCARTY, NAEL A · 2000 to 2024
$41.2M
Genetics Epidemiology of the FMR1 GeneR01HD029909 · NICHD · EMORY UNIVERSITY · PI SHERMAN, STEPHANIE L. · 1994 to 2009
$6.1M
NICHD NIH HHS R01 HD029909NICHD NIH HHS R01HD029909NIGMS NIH HHS G12GM00680NIGMS NIH HHS K12 GM000680
6 · The paper itself

Abstract

Fragile X syndrome (OMIM #300624) is caused by the expansion of a CGG trinucleotide repeat found in the 5' untranslated region of the X-linked FMR1 gene. Although examinations of characteristics associated with repeat instability and expansion of the CGG repeat upon transmission from parent to offspring has occurred in various world populations, none has been conducted in large Sub-Saharan African populations. We have examined the FMR1 CGG repeat structure in a sample of 350 males drawn from the general population of Ghana. We found that Ghanaians and African Americans have similar allele frequency distributions of CGG repeat and its flanking STR markers, DXS548 and FRAXAC1. However, the distribution of the more complex marker, FRAXAC2, is significantly different. The haplotype structure of the FMR1 locus indicated that Ghanaians share several haplotypes with African Americans and Caucasians that are associated with the expanded full mutation. In Ghanaians, the majority of repeat structures contained two AGG interruptions, however, the majority of intermediate alleles (35-49) lacked AGG interruptions. Overall, we demonstrate that allelic diversity of the FMR1 locus among Ghanaians is comparable to African Americans, but includes a minority of CGG array structures not found in other populations.

Indexed as

Polymorphism, GeneticAdultBlack or African AmericanBlack PeopleFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeGene FrequencyGhanaHumansInterspersed Repetitive SequencesMaleWhite PeopleFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID20597902
PMCPMC4149914
OpenAlexW1523561659

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.