Evidence map›Paper›PMID 20595390›Full record

ArticleThe Journal of biological chemistry2010

Characterization of the six glycosyltransferases involved in the biosynthesis of Yersinia enterocolitica serotype O:3 lipopolysaccharide outer core.

Elise Pinta, Katarzyna Anna Duda, Anna Hanuszkiewicz, Tiina A Salminen, José Antonio Bengoechea, Heidi Hyytiäinen, Buko Lindner, Joanna Radziejewska-Lebrecht, Otto Holst, Mikael Skurnik

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Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Elise PintaDepartment of Bacteriology and Immunology, Infection Biology Research Program, Haartman Institute, University of Helsinki, FIN-00014 Helsinki, Finland.
Katarzyna Anna Duda
Anna Hanuszkiewicz
Tiina A Salminen
José Antonio Bengoechea
Heidi Hyytiäinen
Buko Lindner
Joanna Radziejewska-Lebrecht
Otto Holst
Mikael Skurnik
Research Center Borstel - Leibniz Lung Center · DEUniversity of Helsinki · FIÅbo Akademi University · FIFundació Balear d'Innovació i Tecnologia · ESHelsinki University Hospital · FIUniversity of Silesia in Katowice · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yersinia enterocolitica (Ye) is a gram-negative bacterium; Ye serotype O:3 expresses lipopolysaccharide (LPS) with a hexasaccharide branch known as the outer core (OC). The OC is important for the resistance of the bacterium to cationic antimicrobial peptides and also functions as a receptor for bacteriophage phiR1-37 and enterocoliticin. The biosynthesis of the OC hexasaccharide is directed by the OC gene cluster that contains nine genes (wzx, wbcKLMNOPQ, and gne). In this study, we inactivated the six OC genes predicted to encode glycosyltransferases (GTase) one by one by nonpolar mutations to assign functions to their gene products. The mutants expressed no OC or truncated OC oligosaccharides of different lengths. The truncated OC oligosaccharides revealed that the minimum structural requirements for the interactions of OC with bacteriophage phiR1-37, enterocoliticin, and OC-specific monoclonal antibody 2B5 were different. Furthermore, using chemical and structural analyses of the mutant LPSs, we could assign specific functions to all six GTases and also revealed the exact order in which the transferases build the hexasaccharide. Comparative modeling of the catalytic sites of glucosyltransferases WbcK and WbcL followed by site-directed mutagenesis allowed us to identify Asp-182 and Glu-181, respectively, as catalytic base residues of these two GTases. In general, conclusive evidence for specific GTase functions have been rare due to difficulties in accessibility of the appropriate donors and acceptors; however, in this work we were able to utilize the structural analysis of LPS to get direct experimental evidence for five different GTase specificities.

Indexed as

Antibodies, MonoclonalBacteriophagesCatalytic DomainComputational BiologyDrug Resistance, BacterialGalactoseGlycosyltransferasesLipopolysaccharidesModels, MolecularMultigene FamilyMutagenesis, Site-DirectedO AntigensOligosaccharidesPolymyxin BYersinia enterocoliticaAntibodies, MonoclonalGalactoseGlycosyltransferasesLipopolysaccharidesO AntigensOligosaccharidesPolymyxin B

Identifiers

PMID20595390
PMCPMC2934697
OpenAlexW2124633815

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.