Evidence map›Paper›PMID 20595234›Full record

ArticleGenes & development2010

The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome.

Eun Joo Song, Shannon L Werner, Jakob Neubauer, Frank Stegmeier, Julie Aspden, Donald Rio, J Wade Harper, Stephen J Elledge, Marc W Kirschner, Michael Rape

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 214 citations in OpenAlex.

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80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Eun Joo SongDepartment of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA.
Shannon L Werner
Jakob Neubauer
Frank Stegmeier
Julie Aspden
Donald Rio
J Wade Harper
Stephen J Elledge
Marc W Kirschner
Michael Rape
University of California, Berkeley · USHarvard University · USHoward Hughes Medical Institute · US

Funding

Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
CELL CYCLE REGULATIONR01GM039023 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KIRSCHNER, MARC WALLACE · 1988 to 2017
$10.2M
SYSTEMATIC ANALYSIS OF THE DUB PROTEOMER01GM054137 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HARPER, JEFFREY W · 1996 to 2012
$4.1M
BIOCHEMISTRY OF REGULATED PRE-MRNA SPLICING/DROSOPHILAR01GM061987 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2000 to 2010
$3.0M
Dissecting Mechanisms of Ubiquitination and Deubiquitination in Cell Cycle ControR01GM083064 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RAPE, MICHAEL P · 2008 to 2016
$2.2M
Howard Hughes Medical InstituteNIA NIH HHS AG011085NIA NIH HHS R01 AG011085NIGMS NIH HHS GM054137NIGMS NIH HHS GM083064NIGMS NIH HHS GM39023NIGMS NIH HHS GM61987NIGMS NIH HHS R01 GM039023NIGMS NIH HHS R01 GM054137NIGMS NIH HHS R01 GM061987NIGMS NIH HHS R01 GM083064
6 · The paper itself

Abstract

The spliceosome, a dynamic assembly of proteins and RNAs, catalyzes the excision of intron sequences from nascent mRNAs. Recent work has suggested that the activity and composition of the spliceosome are regulated by ubiquitination, but the underlying mechanisms have not been elucidated. Here, we report that the spliceosomal Prp19 complex modifies Prp3, a component of the U4 snRNP, with nonproteolytic K63-linked ubiquitin chains. The K63-linked chains increase the affinity of Prp3 for the U5 snRNP component Prp8, thereby allowing for the stabilization of the U4/U6.U5 snRNP. Prp3 is deubiquitinated by Usp4 and its substrate targeting factor, the U4/U6 recycling protein Sart3, which likely facilitates ejection of U4 proteins from the spliceosome during maturation of its active site. Loss of Usp4 in cells interferes with the accumulation of correctly spliced mRNAs, including those for alpha-tubulin and Bub1, and impairs cell cycle progression. We propose that the reversible ubiquitination of spliceosomal proteins, such as Prp3, guides rearrangements in the composition of the spliceosome at distinct steps of the splicing reaction.

Indexed as

UbiquitinationAntigens, NeoplasmCell CycleDNA Repair EnzymesHeLa CellsHumansNuclear ProteinsProtein SplicingRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA Splicing FactorsSpliceosomesUbiquitinUbiquitin-Specific ProteasesUbiquitin ThiolesteraseAntigens, NeoplasmDNA Repair EnzymesNuclear ProteinsPRPF19 protein, humanPRPF3 protein, humanRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA Splicing FactorsSART3 protein, humanUbiquitinUbiquitin-Specific ProteasesUbiquitin ThiolesteraseUSP4 protein, human

Identifiers

PMID20595234
PMCPMC2895201
OpenAlexW2169870776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.