Evidence map›Paper›PMID 20592726›Full record

ArticleClinical pharmacology and therapeutics2010

Genetic variations in GRIA1 on chromosome 5q33 related to asparaginase hypersensitivity.

S-H Chen, D Pei, W Yang, C Cheng, S Jeha, N J Cox, W E Evans, C-H Pui, M V Relling

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Clinical pharmacology and therapeutics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 81 citations in OpenAlex.

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  14. Evaluating the Frequencies ofThe application of clinical genetics · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

S-H ChenDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital,Memphis, Tennessee, USA.
D Pei
W Yang
C Cheng
S Jeha
N J Cox
W E Evans
C-H Pui
M V Relling
St. Jude Children's Research Hospital · USAmerican Association of Colleges of Pharmacy · USChang Gung Memorial Hospital · TWUniversity of Chicago · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI RATAIN, MARK J · 2000 to 2014
$39.0M
THE STANFORD PHARMACOGENETICS KNOWLEDGE BASEU01GM061374 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2000 to 2009
$24.0M
NCI NIH HHS CA 21765NCI NIH HHS P30 CA021765NIGMS NIH HHS U01 GM061374NIGMS NIH HHS U01 GM061393NIGMS NIH HHS U01GM61374NIGMS NIH HHS U01 GM61393
6 · The paper itself

Abstract

The genetic variations that result in allergy to asparaginase are as yet undetermined. We interrogated more than 500,000 single-nucleotide polymorphisms (SNPs) in 485 children with acute lymphoblastic leukemia (ALL), 322 in a discovery cohort, and 163 in a validation cohort. In the top 100 SNPs associated with allergy in the discovery cohort, chromosome 5 was overrepresented as compared with other chromosomes (P = 0.00032), hosting 10 SNPs annotated to genes. Among these 10 SNPs, one SNP (rs4958351) [corrected], in GRIA1 on chromosome 5q33, was replicated in the validation cohort (P = 1.8 x 10(-5), 2.9 x 10(-3), and 3.5 x 10(-7) in the discovery, validation, and combined cohorts, respectively). Four additional SNPs annotated to GRIA1 were also significantly associated with allergy (P < 0.05) in both cohorts. Chromosome 5q33 has previously been associated with asthma and atopy. These data contribute to the growing body of evidence that there is an inherited component to predisposition to drug allergy.

Indexed as

AdolescentAllelesAntineoplastic AgentsAsparaginaseChild, PreschoolChromosomes, Human, Pair 5Cohort StudiesDNADrug HypersensitivityFemaleGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGenotypeHumansMaleAntineoplastic AgentsAsparaginaseDNAReceptors, AMPA

Identifiers

PMID20592726
PMCPMC3000799
OpenAlexW2090872748

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.