Evidence map›Paper›PMID 20592226›Full record

ArticleInvestigative ophthalmology & visual science2010

Ubiquitin proteasome pathway-mediated degradation of proteins: effects due to site-specific substrate deamidation.

Edward J Dudek, Kirsten J Lampi, Jason A Lampi, Fu Shang, Jonathan King, Yongting Wang, Allen Taylor

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  5. Smurf1 Modulates Smad Signaling Pathway in Fibrotic Cataract Formation.Investigative ophthalmology & visual science · 2024
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  7. Proteostasis in aging-associated ocular disease.Molecular aspects of medicine · 2022
    Review
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Edward J DudekLaboratory for Nutrition and Vision Research, United States Department of Agriculture Human Nutrition Research Center on Aging at Tufts University, Boston, Massachusetts 02111-1524, USA.
Kirsten J Lampi
Jason A Lampi
Fu Shang
Jonathan King
Yongting Wang
Allen Taylor
Massachusetts Institute of Technology · USOregon Health & Science University · USUnited States Department of Agriculture · USTufts University · US

Funding

Ubiquitin Function In Eye LensR01EY013250 · NEI · TUFTS UNIVERSITY BOSTON · PI TAYLOR, ALLEN · 2001 to 2012
$4.0M
Human gammaD-Crystallin Folding Misfolding &Fibril FormR01EY015834 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KING, JONATHAN ALAN · 2005 to 2014
$3.5M
Role of Deamidation in Human Beta-Crystallin StructureR01EY012239 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 2004 to 2012
$2.2M
Role of ubiqutin in quality control of lens proteinsR01EY011717 · NEI · TUFTS UNIVERSITY BOSTON · PI SHANG, FU · 2003 to 2010
$1.8M
DEAMIDATION AND HUMAN BETA CRYSTALLIN STRUCTURER29EY012239 · NEI · OREGON HEALTH AND SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 1998 to 2002
$433k
UBIQUITIN DEPENDENT PATHWAY AND LENS EPITHELIUMR29EY011717 · NEI · TUFTS UNIVERSITY BOSTON · PI SHANG, FU · 1998 to 2002
$381k
NEI NIH HHS EY011717NEI NIH HHS EY012239NEI NIH HHS EY13250NEI NIH HHS R01 EY011717NEI NIH HHS R01 EY012239NEI NIH HHS R01 EY013250NEI NIH HHS R01 EY015834NEI NIH HHS R29 EY011717NEI NIH HHS R29 EY012239
6 · The paper itself

Abstract

purposeThe accumulation, aggregation, and precipitation of proteins is etiologic for age-related diseases, particularly cataract, because the precipitates cloud the lens. Deamidation of crystallins is associated with protein precipitation, aging, and cataract. Among the roles of the ubiquitin proteasome pathway (UPP) is protein surveillance and maintenance of protein quality. The purpose of this study was to determine whether deamidation can alter clearance of crystallins by the UPP.

methodsWild-type (WT) and deamidated crystallins were expressed and (125)I-radiolabeled. Ubiquitination and degradation were monitored separately.

resultsFor betaB2 crystallins, rates of ubiquitination and adenosine triphosphate-dependent degradation, both indicators of active UPP, occurred in the order Q70E/Q162E>Q162E> Q70E=WT betaB2 using reticulocyte lysate as the source of degradation machinery. Human lens epithelial cell lysates and lens fiber cell lysates also catalyzed ubiquitination but only limited degradation. Supplementation with proteasome failed to enhance degradation. Rates of ubiquitination and degradation of WT and deamidated betaB1 crystallins were rapid and showed little relationship to the site of deamidation using N157D and Q204E mutants. gammaD-Crystallins were not degraded by the UPP. Deamidation altered amine reactivity, circular dichroism spectra, surface hydrophobicity, and thermal stability.

conclusionsThese data demonstrate for the first time that, like mild oxidative stress, deamidation of some proteins makes them preferred substrates for ubiquitination and, in some cells, for UPP-dependent degradation. Failure to properly execute ubiquitination and degrade the ubiquitin-conjugates may explain their accumulation on aging and in cataractogenesis.

Indexed as

Amino Acid Sequencebeta-Crystallin B ChainDeaminationElectrophoresis, Polyacrylamide GelEpithelial CellsHumansLens, CrystallineMolecular Sequence DataOxidative StressSubstrate SpecificityUbiquitinUbiquitinationUbiquitin-Protein Ligase Complexesbeta-crystallin B2beta-Crystallin B ChainCRYBB1 protein, humanUbiquitinUbiquitin-Protein Ligase Complexes

Identifiers

PMID20592226
PMCPMC2910644
OpenAlexW2006625206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.