Evidence map›Paper›PMID 20592081›Full record

ArticleJournal of virology2010

The architecture and chemical stability of the archaeal Sulfolobus turreted icosahedral virus.

Reza Khayat, Chi-yu Fu, Alice C Ortmann, Mark J Young, John E Johnson

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Viruses of theFrontiers in microbiology · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Functional interplay between a virus and the ESCRT machinery in archaea.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  8. Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  9. Article
  10. Confessions of an icosahedral virus crystallographer.Microscopy (Oxford, England) · 2013
    Review
  11. Structure of Sputnik, a virophage, at 3.5-Å resolution.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Structure and cell biology of archaeal virus STIV.Current opinion in virology · 2012
    Review
  13. Article
  14. Article
  15. Lipids of archaeal viruses.Archaea (Vancouver, B.C.) · 2012
    Review
  16. Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Reza KhayatScripps Research Institute, Department of Molecular Biology, La Jolla, California, USA.
Chi-yu Fu
Alice C Ortmann
Mark J Young
John E Johnson
Scripps Research Institute · USMontana State University · USUniversity of South Alabama · US

Funding

WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Studies of large and small-scale virus capsid dynamicsR01GM054076 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1995 to 2014
$6.2M
Biophysical studies of a Sulfolobus icosahedral virusF32AI065071 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI KHAYAT, REZA · 2005 to 2007
$144k
NCRR NIH HHS P41 RR017573NCRR NIH HHS RR17573NIAID NIH HHS F32 AI065071NIGMS NIH HHS R01 GM054076
6 · The paper itself

Abstract

Viruses utilize a diverse array of mechanisms to deliver their genomes into hosts. While great strides have been made in understanding the genome delivery of eukaryotic and prokaryotic viruses, little is known about archaeal virus genome delivery and the associated particle changes. The Sulfolobus turreted icosahedral virus (STIV) is a double-stranded DNA (dsDNA) archaeal virus that contains a host-derived membrane sandwiched between the genome and the proteinaceous capsid shell. Using cryo-electron microscopy (cryo-EM) and different biochemical treatments, we identified three viral morphologies that may correspond to biochemical disassembly states of STIV. One of these morphologies was subtly different from the previously published 27-A-resolution electron density that was interpreted with the crystal structure of the major capsid protein (MCP). However, these particles could be analyzed at 12.5-A resolution by cryo-EM. Comparing these two structures, we identified the location of multiple proteins forming the large turret-like appendages at the icosahedral vertices, observed heterogeneous glycosylation of the capsid shell, and identified mobile MCP C-terminal arms responsible for tethering and releasing the underlying viral membrane to and from the capsid shell. Collectively, our studies allow us to propose a fusogenic mechanism of genome delivery by STIV, in which the dismantled capsid shell allows for the fusion of the viral and host membranes and the internalization of the viral genome.

Indexed as

Cryoelectron MicroscopyMacromolecular SubstancesModels, BiologicalModels, MolecularProtein Structure, QuaternaryRudiviridaeSulfolobusViral ProteinsVirionVirus InternalizationMacromolecular SubstancesViral Proteins

Identifiers

PMID20592081
PMCPMC2937605
OpenAlexW2171012839

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.