Evidence map›Paper›PMID 20592035›Full record

ArticleThe Journal of biological chemistry2010

Structural determination of functional domains in early B-cell factor (EBF) family of transcription factors reveals similarities to Rel DNA-binding proteins and a novel dimerization motif.

Marina I Siponen, Magdalena Wisniewska, Lari Lehtiö, Ida Johansson, Linda Svensson, Grzegorz Raszewski, Lennart Nilsson, Mikael Sigvardsson, Helena Berglund

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  11. A NovelFrontiers in genetics · 2021
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  14. De novo variants inCold Spring Harbor molecular case studies · 2017
    Article
  15. Article
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  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Marina I SiponenDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.
Magdalena Wisniewska
Lari Lehtiö
Ida Johansson
Linda Svensson
Grzegorz Raszewski
Lennart Nilsson
Mikael Sigvardsson
Helena Berglund
Karolinska Institutet · SELinköping University · SEResearch Council of Finland · FIStructural Genomics Consortium · CA

Funding

CIHRWellcome Trust
6 · The paper itself

Abstract

The early B-cell factor (EBF) transcription factors are central regulators of development in several organs and tissues. This protein family shows low sequence similarity to other protein families, which is why structural information for the functional domains of these proteins is crucial to understand their biochemical features. We have used a modular approach to determine the crystal structures of the structured domains in the EBF family. The DNA binding domain reveals a striking resemblance to the DNA binding domains of the Rel homology superfamily of transcription factors but contains a unique zinc binding structure, termed zinc knuckle. Further the EBF proteins contain an IPT/TIG domain and an atypical helix-loop-helix domain with a novel type of dimerization motif. The data presented here provide insights into unique structural features of the EBF proteins and open possibilities for detailed molecular investigations of this important transcription factor family.

Indexed as

Protein Interaction Domains and MotifsCrystallography, X-RayHumansProtein ConformationProtein MultimerizationProto-Oncogene Proteins c-relStructural Homology, ProteinTrans-ActivatorsTranscription FactorsZincEBF1 protein, humanProto-Oncogene Proteins c-relTrans-ActivatorsTranscription FactorsZinc

Identifiers

PMID20592035
PMCPMC2923972
OpenAlexW2077599560

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.