Evidence map›Paper›PMID 20591822›Full record

ArticleNucleic acids research2010

Class-specific restrictions define primase interactions with DNA template and replicative helicase.

Marilynn A Larson, Mark A Griep, Rafael Bressani, Kiran Chintakayala, Panos Soultanas, Steven H Hinrichs

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Marilynn A LarsonDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198-5900, USA. malarson@unmc.edu
Mark A Griep
Rafael Bressani
Kiran Chintakayala
Panos Soultanas
Steven H Hinrichs
University of Nebraska–Lincoln · USUniversity of Nebraska Medical Center · USUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E004717/1Biotechnology and Biological Sciences Research Council BB/E006450/1Biotechnology and Biological Sciences Research Council E004717/1
6 · The paper itself

Abstract

Bacterial primase is stimulated by replicative helicase to produce RNA primers that are essential for DNA replication. To identify mechanisms regulating primase activity, we characterized primase initiation specificity and interactions with the replicative helicase for gram-positive Firmicutes (Staphylococcus, Bacillus and Geobacillus) and gram-negative Proteobacteria (Escherichia, Yersinia and Pseudomonas). Contributions of the primase zinc-binding domain, RNA polymerase domain and helicase-binding domain on de novo primer synthesis were determined using mutated, truncated, chimeric and wild-type primases. Key residues in the β4 strand of the primase zinc-binding domain defined class-associated trinucleotide recognition and substitution of these amino acids transferred specificity across classes. A change in template recognition provided functional evidence for interaction in trans between the zinc-binding domain and RNA polymerase domain of two separate primases. Helicase binding to the primase C-terminal helicase-binding domain modulated RNA primer length in a species-specific manner and productive interactions paralleled genetic relatedness. Results demonstrated that primase template specificity is conserved within a bacterial class, whereas the primase-helicase interaction has co-evolved within each species.

Indexed as

Amino Acid SequenceDNADNA HelicasesDNA PrimaseGenetic Complementation TestGram-Positive BacteriaMolecular Sequence DataNucleotidesProtein Structure, TertiaryProteobacteriaRNASpecies SpecificityTemplates, GeneticDNADNA HelicasesDNA PrimaseNucleotidesRNARNA primers

Identifiers

PMID20591822
PMCPMC2978363
OpenAlexW2064790645

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.