Evidence map›Paper›PMID 20589883›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2010

Developmental microRNA expression profiling of murine embryonic orofacial tissue.

Partha Mukhopadhyay, Guy Brock, Vasyl Pihur, Cynthia Webb, M Michele Pisano, Robert M Greene

Abstract read
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. MicroRNAs in Palatogenesis and Cleft Palate.Frontiers in physiology · 2017
    Review
  13. Article
  14. Review
  15. Article
  16. Molecular basis of cleft palates in mice.World journal of biological chemistry · 2015
    Review
  17. Article
  18. MicroRNA expression profiling of the developing murine upper lip.Development, growth & differentiation · 2014
    Article
  19. Methylated microRNA genes of the developing murine palate.MicroRNA (Shariqah, United Arab Emirates) · 2014
    Article
  20. Developmental profiles of the murine palatal methylome.Birth defects research. Part A, Clinical and molecular teratology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Partha MukhopadhyayUniversity of Louisville Birth Defects Center, Department of Molecular Cellular and Craniofacial Biology, ULSD, University of Louisville, Kentucky, USA.
Guy Brock
Vasyl Pihur
Cynthia Webb
M Michele Pisano
Robert M Greene
University of Louisville · US

Funding

U-SHAPED DEVELOPMENT IN INFANT COGNITION AND PERCEPTIONP20RR017702 · NCRR · UNIVERSITY OF LOUISVILLE · PI PISANO, M. MICHELE · 2002 to 2011
$15.0M
Transcriptional Coactivators and Pregnancy OutcomesR01HD053509 · NICHD · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2012
$1.5M
NUTRITIONAL EPIGENETICS AND OROFACIAL DEVELOPMENTR01DE018215 · NIDCR · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2011
$1.3M
NCRR NIH HHS P20 RR017702NICHD NIH HHS HD053509NICHD NIH HHS R01 HD053509NIDCR NIH HHS DE018215NIDCR NIH HHS R01 DE018215
6 · The paper itself

Abstract

backgroundOrofacial development is a multifaceted process involving precise, spatio-temporal expression of a panoply of genes. MicroRNAs (miRNAs), the largest family of noncoding RNAs involved in gene silencing, represent critical regulators of cell and tissue differentiation. MicroRNA gene expression profiling is an effective means of acquiring novel and valuable information regarding the expression and regulation of genes, under the control of miRNA, involved in mammalian orofacial development.

methodsTo identify differentially expressed miRNAs during mammalian orofacial ontogenesis, miRNA expression profiles from gestation day (GD) -12, -13 and -14 murine orofacial tissue were compared utilizing miRXplore microarrays from Miltenyi Biotech. Quantitative real-time PCR was utilized for validation of gene expression changes. Cluster analysis of the microarray data was conducted with the clValid R package and the UPGMA clustering method. Functional relationships between selected miRNAs were investigated using Ingenuity Pathway Analysis.

resultsExpression of over 26% of the 588 murine miRNA genes examined was detected in murine orofacial tissues from GD-12-GD-14. Among these expressed genes, several clusters were seen to be developmentally regulated. Differential expression of miRNAs within such clusters wereshown to target genes encoding proteins involved in cell proliferation, cell adhesion, differentiation, apoptosis and epithelial-mesenchymal transformation, all processes critical for normal orofacial development.

conclusionsUsing miRNA microarray technology, unique gene expression signatures of hundreds of miRNAs in embryonic orofacial tissue were defined. Gene targeting and functional analysis revealed that the expression of numerous protein-encoding genes, crucial to normal orofacial ontogeny, may be regulated by specific miRNAs.

Indexed as

AnimalsEmbryo, MammalianFaceFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalMaleMiceMice, Inbred ICRMicroarray AnalysisMicroRNAsMouthReverse Transcriptase Polymerase Chain ReactionMicroRNAs

Identifiers

PMID20589883
PMCPMC3146018
OpenAlexW2148705069

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.