Evidence map›Paper›PMID 20584900›Full record

ArticleThe Journal of biological chemistry2010

A small ubiquitin-related modifier-interacting motif functions as the transcriptional activation domain of Krüppel-like factor 4.

James X Du, Beth B McConnell, Vincent W Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

James X DuDivision of Digestive Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Beth B McConnell
Vincent W Yang
Center for Digestive and Liver Diseases · USCentre For Digestive Diseases · AUEmory University · US

Funding

REGULATION OF INTESTINAL EPITHELIAL CELL PROLIFERATIONR01DK052230 · NIDDK · STATE UNIVERSITY NEW YORK STONY BROOK · PI Vincent W Yang · 1997 to 2026
$8.7M
MECHANISMS OF INTESTINAL TUMORIGENESISR01CA084197 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YANG, VINCENT W · 2000 to 2020
$7.5M
Emory Epithelial Pathobiology Research Development CenterR24DK064399 · NIDDK · EMORY UNIVERSITY · PI PARKOS, CHARLES A · 2003 to 2012
$5.3M
Proliferative Responses to Enteric Bacterial Pathogens in Intestinal TissuesK01DK076742 · NIDDK · EMORY UNIVERSITY · PI MCCONNELL, BETH B · 2007 to 2011
$667k
Regulation of Kruppel-Like Factors 5 by PIAS1 and SUMOF32DK077381 · NIDDK · EMORY UNIVERSITY · PI DU, XIANXING · 2006 to 2008
$151k
Factors Contributing to Wound Healing in the ColonR03DK089131 · NIDDK · EMORY UNIVERSITY · PI MCCONNELL, BETH B · 2010 to 2011
$83k
NCI NIH HHS CA84197NCI NIH HHS R01 CA084197NIDDK NIH HHS DK52230NIDDK NIH HHS DK64399NIDDK NIH HHS DK76742NIDDK NIH HHS DK77381NIDDK NIH HHS F32 DK077381NIDDK NIH HHS K01 DK076742NIDDK NIH HHS R01 DK052230NIDDK NIH HHS R03 DK089131NIDDK NIH HHS R24 DK064399
6 · The paper itself

Abstract

The zinc finger transcription factor, Krüppel-like factor 4 (KLF4), regulates numerous biological processes, including proliferation, differentiation, and embryonic stem cell self-renewal. Although the DNA sequence to which KLF4 binds is established, the mechanism by which KLF4 controls transcription is not well defined. Small ubiquitin-related modifier (SUMO) is an important regulator of transcription. Here we show that KLF4 is both SUMOylated at a single lysine residue and physically interacts with SUMO-1 in a region that matches an acidic and hydrophobic residue-rich SUMO-interacting motif (SIM) consensus. The SIM in KLF4 is required for transactivation of target promoters in a SUMO-1-dependent manner. Mutation of either the acidic or hydrophobic residues in the SIM significantly impairs the ability of KLF4 to interact with SUMO-1, activate transcription, and inhibit cell proliferation. Our study provides direct evidence that SIM in KLF4 functions as a transcriptional activation domain. A survey of transcription factor sequences reveals that established transactivation domains of many transcription factors contain sequences highly related to SIM. These results, therefore, illustrate a novel mechanism by which SUMO interaction modulates the activity of transcription factors.

Indexed as

Transcriptional ActivationAmino Acid MotifsAmino Acid SequenceAnimalsBinding SitesCattleCell LineCell ProliferationChlorocebus aethiopsCOS CellsGene Knockdown TechniquesHumansKruppel-Like Factor 4Kruppel-Like Transcription FactorsLysineMiceKLF4 protein, humanKlf4 protein, mouseKlf4 protein, ratKruppel-Like Factor 4Kruppel-Like Transcription FactorsLysineRNA, Small InterferingSUMO-1 Protein

Identifiers

PMID20584900
PMCPMC2934694
OpenAlexW2076138952

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.