Evidence map›Paper›PMID 20583094›Full record

ArticleCurrent protocols in molecular biology2010

Analysis of serine-threonine kinase specificity using arrayed positional scanning peptide libraries.

Catherine Chen, Benjamin E Turk

Abstract read
In one paragraph

Article in Current protocols in molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Global substrate specificity profiling of post-translational modifying enzymes.Protein science : a publication of the Protein Society · 2018
    Review
  5. Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  6. Article
  7. Phosphoproteomic analysis identifies the tumor suppressor PDCD4 as a RSK substrate negatively regulated by 14-3-3.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. Review
  9. Review
  10. Bivalent inhibitors of protein kinases.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Catherine ChenYale University, New Haven, Connecticut, USA.
Benjamin E Turk
Yale University · US

Funding

BIOCHEMICAL PHARMACOLOGY OF ANTIHIV COMPOUNDSR01AI038204 · NIAID · YALE UNIVERSITY · PI CHENG, YUNG-CHI · 1995 to 2014
$5.2M
BIOCHEMICAL ASPECTS OF CHEMOTHERAPYT32CA009085 · NCI · YALE UNIVERSITY · PI CHENG, YUNG-CHI · 1985 to 2009
$2.8M
Proteome-wide analysis of kinase phosphorylation specificity in yeastR01GM079498 · NIGMS · YALE UNIVERSITY · PI TURK, BENJAMIN E · 2007 to 2011
$1.8M
NCI NIH HHS T32 CA009085NIAID NIH HHS R01 AI038204NIGMS NIH HHS R01 GM079498NIGMS NIH HHS R01 GM079498.
6 · The paper itself

Abstract

Protein kinases vary substantially in their consensus phosphorylation motifs, the residues that are either preferred or deselected by the kinase at specific positions surrounding the phosphorylation site. The protocol described here is used to rapidly determine phosphorylation motifs for serine-threonine kinases. The procedure involves screening an arrayed combinatorial peptide library consisting of 198 biotinylated substrates. Peptides are phosphorylated by the kinase of interest in the presence of radiolabeled ATP and then captured on streptavidin membrane. The membrane is subsequently washed, dried, and exposed to a phosphor screen to visualize and quantify incorporation of radiolabel into the peptides. The phosphorylation motif is thereby derived from the relative extent of phosphorylation of each peptide in the array.

Indexed as

Peptide LibraryPhosphorus RadioisotopesProtein Serine-Threonine KinasesStaining and LabelingSubstrate SpecificityPeptide LibraryPhosphorus RadioisotopesProtein Serine-Threonine Kinases

Identifiers

PMID20583094
PMCPMC2937348
OpenAlexW1538962080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.