Evidence map›Paper›PMID 20582581›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010

Transcription factor profiling leading to the identification of putative transcription factors involved in the Medicago truncatula-Uromyces striatus interaction.

E Madrid, J Gil, D Rubiales, F Krajinski, A Schlereth, T Millán

Abstract read
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Ascochyta Blight in Chickpea: An Update.Journal of fungi (Basel, Switzerland) · 2023
    Review
  2. Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019
    Review
  3. Defence gene expression profiling to Ascochyta rabiei aggressiveness in chickpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

E MadridDepartamento Genética, Córdoba University, Córdoba, Spain. b62mahee@uco.es
J Gil
D Rubiales
F Krajinski
A Schlereth
T Millán
Cordoba University · USInstituto de Agricultura Sostenible · ESMax Planck Institute of Molecular Plant Physiology · DEMax Planck Society · DEUniversity of Córdoba · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the host response to Uromyces sp., the causal agent of rust in many crop species, is crucial in elucidating the specific biology of rust resistance. In an attempt to unravel the Medicago truncatula-U. striatus interaction, we performed a global analysis of transcription factor (TF) expression in resistant and susceptible accessions of the model plant M. truncatula during infection with U. striatus. For this purpose, an established qPCR platform was applied, consisting of specific primer pairs for more than 1,000 predicted TF genes. A total of 107 putative TF genes out of the 1,084 studied were differentially expressed. Thirteen of the TFs that were differentially expressed between resistant and susceptible genotypes are known to be relevant in cellular defense. These data suggest that resistance could be mediated both by genes that are constitutively expressed and by genes, which are activated/repressed when plants are inoculated. These defense related TFs sequences were amplified in chickpea DNA with the aim of determining the location of these genes on the genetic map of this crop and identifying possible DNA regions involved in resistance mechanisms.

Indexed as

Genes, PlantBasidiomycotaCicerCluster AnalysisGene Expression ProfilingGene Expression Regulation, PlantGenetic LinkageHost-Pathogen InteractionsMedicago truncatulaPlant DiseasesPlant ImmunityTranscription FactorsTranscription Factors

Identifiers

PMID20582581
OpenAlexW2078572862

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.