Evidence map›Paper›PMID 20582164›Full record

ArticlePLoS neglected tropical diseases2010

Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini.

Neil D Young, Bronwyn E Campbell, Ross S Hall, Aaron R Jex, Cinzia Cantacessi, Thewarach Laha, Woon-Mok Sohn, Banchob Sripa, Alex Loukas, Paul J Brindley and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 152 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Trematode Genomics and Proteomics.Advances in experimental medicine and biology · 2024
    Article
  7. Article
  8. Liver Flukes: Clonorchis and Opisthorchis.Advances in experimental medicine and biology · 2024
    Review
  9. Cystatins from the Human Liver FlukePathogens (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Molecular Cloning and Characterization of aPathogens (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Frontiers in cellular and infection microbiology · 2021
    Article
  18. Article
  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Neil D YoungDepartment of Veterinary Science, The University of Melbourne, Werribee, Victoria, Australia. nyoung@unimelb.edu.au
Bronwyn E Campbell
Ross S Hall
Aaron R Jex
Cinzia Cantacessi
Thewarach Laha
Woon-Mok Sohn
Banchob Sripa
Alex Loukas
Paul J Brindley
Robin B Gasser
University of Melbourne · AUKhon Kaen University · THGyeongsang National University · KRJames Cook University · AUWashington University Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The two parasitic trematodes, Clonorchis sinensis and Opisthorchis viverrini, have a major impact on the health of tens of millions of humans throughout Asia. The greatest impact is through the malignant cancer ( = cholangiocarcinoma) that these parasites induce in chronically infected people. Therefore, both C. sinensis and O. viverrini have been classified by the World Health Organization (WHO) as Group 1 carcinogens. Despite their impact, little is known about these parasites and their interplay with the host at the molecular level. Recent advances in genomics and bioinformatics provide unique opportunities to gain improved insights into the biology of parasites as well as their relationships with their hosts at the molecular level. The present study elucidates the transcriptomes of C. sinensis and O. viverrini using a platform based on next-generation (high throughput) sequencing and advanced in silico analyses. From 500,000 sequences, >50,000 sequences were assembled for each species and categorized as biologically relevant based on homology searches, gene ontology and/or pathway mapping. The results of the present study could assist in defining molecules that are essential for the development, reproduction and survival of liver flukes and/or that are linked to the development of cholangiocarcinoma. This study also lays a foundation for future genomic and proteomic research of C. sinensis and O. viverrini and the cancers that they are known to induce, as well as novel intervention strategies.

Indexed as

AnimalsClonorchis sinensisCluster AnalysisComparative Genomic HybridizationComputational BiologyDatabases, GeneticGene Expression ProfilingLife Cycle StagesOpisthorchisProteinsSequence Analysis, ProteinSequence Analysis, RNAProteins

Identifiers

PMID20582164
PMCPMC2889816
OpenAlexW2063519822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.