Evidence map›Paper›PMID 20581826›Full record

ArticleNature structural & molecular biology2010

Determinants of structural and functional plasticity of a widely conserved protease chaperone complex.

Melisa Merdanovic, Nicolette Mamant, Michael Meltzer, Simon Poepsel, Alexandra Auckenthaler, Rie Melgaard, Patrick Hauske, Luitgard Nagel-Steger, Anthony R Clarke, Markus Kaiser and 2 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. An allosteric HTRA1-calpain 2 complex with restricted activation profile.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Computational Design of Novel Allosteric Inhibitors forMolecules (Basel, Switzerland) · 2021
    Article
  4. Review
  5. Activation by substoichiometric inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. ThePlant physiology · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Temperature dependent dynamics of DegP-trimer: A molecular dynamics study.Computational and structural biotechnology journal · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Melisa MerdanovicCentre for Medical Biotechnology, FB Biology and Geography, University Duisburg-Essen, Essen, Germany.
Nicolette Mamant
Michael Meltzer
Simon Poepsel
Alexandra Auckenthaler
Rie Melgaard
Patrick Hauske
Luitgard Nagel-Steger
Anthony R Clarke
Markus Kaiser
Robert Huber
Michael Ehrmann

Funding

Biotechnology and Biological Sciences Research Council BBS/B/03955
6 · The paper itself

Abstract

Channeling of misfolded proteins into repair, assembly or degradation pathways is often mediated by complex and multifunctional cellular factors. Despite detailed structural information, the underlying regulatory mechanisms governing these factors are not well understood. The extracytoplasmic heat-shock factor DegP (HtrA) is a well-suited model for addressing mechanistic issues, as it is regulated by the common mechanisms of allostery and activation by oligomerization. Site-directed mutagenesis combined with refolding and oligomerization studies of chemically denatured DegP revealed how substrates trigger the conversion of the resting conformation into the active conformation. Binding of specific peptides to PDZ domain-1 causes a local rearrangement that is allosterically transmitted to the substrate-binding pocket of the protease domain. This activated state readily assembles into larger oligomeric particles, thus stabilizing the catalytically active form and providing a degradation cavity for protein substrates. The implications of these data for the mechanism of protein quality control are discussed.

Indexed as

Amino Acid SequenceBacteriaBacterial ProteinsCatalytic DomainHeat-Shock ProteinsModels, MolecularPDZ DomainsPeptidesPeriplasmic ProteinsPoint MutationProtein BindingProtein FoldingProtein MultimerizationSerine EndopeptidasesBacterial ProteinsDegP proteaseHeat-Shock ProteinsPeptidesPeriplasmic ProteinsSerine Endopeptidases

Identifiers

PMID20581826

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.